Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq52 98.7 8e-16 seq578 96.9 3e-15 seq322 96.9 3e-15 >seq52 Length=2480672 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA-TC 101316 || || | |||||| || | || ||||| || |||||| | | | ||| | || || Sbjct 411648 AACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAACCAGACAAAGTACATCCAATC 411589 Query 101317 GTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATC 101376 |||| ||||||||| ||||| |||| | || ||||| || ||||| ||||| ||||| Sbjct 411588 TTCCAGTTGCTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTATC 411529 Query 101377 TTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGT 101436 || || || |||||| ||||||||||||| || | ||| || || || ||| || Sbjct 411528 CTGGATCTTGGCCTTTACATTTTCTACAGTGTCCGAGGGTTCAACCTCGAG-GTGGTGGT 411470 Query 101437 TTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | | ||||||| || ||||| || Sbjct 411469 CTTCCCCATAACGGTTTTTATGAAAATCTGTAT 411437 >seq578 Length=10717883 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || ||||| ||||| || || ||||| || | | ||| | |||| |||| ||| Sbjct 1250965 TGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGC 1250906 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| || || || ||||||||||||||||| || || || Sbjct 1250905 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTG 1250846 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| | |||||||| || |||| || ||||| || Sbjct 1250845 GCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTC 1250786 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 1250785 AGTGTCTTCACGAAGATCTGCAT 1250763 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || ||||| || || ||||| || | | ||| | |||| |||| ||| Sbjct 1250737 TGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGC 1250678 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| || || || ||||||||||||||||| || || || Sbjct 1250677 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTG 1250618 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | ||||| | ||||| || || |||| || ||||| || Sbjct 1250617 GCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTC 1250558 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||| || || || |||||||| Sbjct 1250557 AGAGTCTTCACGAAGATCTGCAT 1250535 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || ||||| || || ||||| || | | ||| | |||| |||| ||| Sbjct 1250509 TGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCCAGCTGC 1250450 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| || || || ||||||||||||||||| || || || Sbjct 1250449 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGAATGCCTTCTTTATCCTGGATCTTG 1250390 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 | || ||| | || ||||| | ||||| || || ||| || ||||| || Sbjct 1250389 TCCTTCACATTCTCAGTGGTGTCGCTGGGCTCCACCTCCAGGATGATGGTCTTGCCAGTC 1250330 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||||| || || || ||||| Sbjct 1250329 AGGGTTTTCACGAAGATTTGCAT 1250307 >seq322 Length=21489822 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||| || || || |||| || |||||||| | | ||| |||| Sbjct 7411870 AACACAAGATGAAGAGTGGACTCCTTTTTAATGTTGTAATCAGACAAAGTATGTCCATCT 7411929 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 |||| ||||||| | ||||| |||| | || ||||| || ||||| ||||| ||||| Sbjct 7411930 TCCAGTTGCTTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCC 7411989 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTC-AGACGTTTCCACT-TCAAGAGTGACCG 101435 || || || |||||| |||||| |||||| || ||| || | || | ||| | Sbjct 7411990 TGGATCTTGGCCTTTACATTTTCTATAGTGTCCAGGGGTT--CAGTCTCGTGGATGATGG 7412047 Query 101436 TTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || || || || ||||||||||| ||| |||| Sbjct 7412048 TCTTCCCTGTAAAGGTTTTTACAAAAATCGGCAT 7412081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396263278387767