Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq85 96.9 5e-15 seq267 89.7 7e-13 >seq85 Length=1593005 Score = 96.9 bits (106), Expect = 5e-15 Identities = 436/677 (64%), Gaps = 18/677 (3%) Strand=Plus/Minus Query 197151 GATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTCTTCAGTTTGAG 197210 ||| ||||| || ||||| || || | ||| || || | ||| || |||||||| ||||| Sbjct 99142 GATCACCACGAGGTCCAGGGTATCACCCACGCCATCAAGGTAGTCCTTCTTCAGCTTGAG 99083 Query 197211 CCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGGGTCTTGATCAT 197270 |||| | || |||||||||||||| ||||| || | || |||| |||||| | ||| Sbjct 99082 CCAGTTGTGTGACCTCTTGGCAATCTCATAGGTGGCATCAACATCCAAGGTCTTCACCAT 99023 Query 197271 CAATCCCTCGCAATCTTCCTTCACGGCCTTGTTCATGAAAGTTTGAATGTCTTCCGGTTT 197330 || |||| ||| || ||||| | || | || ||| ||| | ||| | Sbjct 99022 CAGCCCCTTGCAGGAGTCTTTCACTGACTGCTCCAAGAACTCAGCAATCTGCTCCATGTC 98963 Query 197331 GTTAGACATCATATCTCGCGCGAAGATAAATTGTCCCTCCACCTCCGTAA-AACAACTCC 197389 || | || | |||||| ||| | || || ||| || || |||| Sbjct 98962 CTTGGTGTCCAGAGAGGTGACGAAGACAAACTCGCCTTCTGTCTC--TACGAAGTTCTCC 98905 Query 197390 TC-ATAAGTTCCC--TCCTCTCTCTGAAGCTCTTGTTGACCTGAGACACTCCGTTCATGT 197446 | ||| | || | | | | | || | |||| ||||| |||| | | || Sbjct 98904 CAGAGAAGCTGCCGGTGTTGGGACAGGGGTTCACG--GACCAGAGACTCTCCACTGAGGT 98847 Query 197447 ACAACACGTCAAAAGCAAAGACGCACACCTGGACGGTTATCTCTTCTTCCTTGACATCTT 197506 | | | ||| || ||| | | |||||||| || || ||| | | | || || | Sbjct 98846 AGATGAGGTCGAAGGCATACAGACACACCTGCACCTGGATTTCTGCAGCATCTACTTCCT 98787 Query 197507 TACGTTTTCTGGTCGCCAGCTTTTGAAAGGGAAGGATCTGCTTCTTCTCAACGTCCCAAG 197566 | ||||| | || | || |||||| || ||||||||||||| || |||||||| Sbjct 98786 TCCGTTTGCGAGTGGTTAGGACTTGAAACGGCTGGATCTGCTTCTTTTCCCAGTCCCAAG 98727 Query 197567 CAACTGCCTCAGCGTCCAAGATGAAAGACTTCACTCCCTCG---TTGATCGATTGGGGAA 197623 | || || |||| ||||| ||| || ||| | ||| | || ||| ||||||| Sbjct 98726 CCACAGCTTCAGTGTCCAGGATAAAGGACGTGACTGAGGGGAGTTTAATC--TTGGGGAT 98669 Query 197624 GCCTATTGATTATGTCGGGGTACTTCTCGGTGTTATTTTCAGAGTTGCGGCTAAAAATTC 197683 | | |||| |||| |||||||||| | ||||| | ||| || | ||| || || Sbjct 98668 G-CGGCTGATGATGTTGGGGTACTTCCCTGTGTTGTCTTCCTGATTCCTGCTGAAGATCT 98610 Query 197684 TAATCTTCCCTCCCTCCATGTAG-TGAATCTGAGCCCTCTCTCCGTCATACTTGTACTCG 197742 | | || ||| || || | | || || ||||| ||||||| || | || ||| ||||| Sbjct 98609 TCACCTCCCCGCCTTCTA-GAAGATGGATCTGTGCCCTCTGCCCATAGTATTTGAACTCG 98551 Query 197743 CAAGAAAAGACAG-CTCCTTTCAGCTTGCTCATCACGTCTTCGATTCCCGTGGTAGGAGT 197801 || | ||| | | ||||| ||| | ||| || || || ||| || ||| Sbjct 98550 CAGGTGAAGGCTGCCTCCTCAAAGCGT-TTCAGGACCTCACTGACACCCCGAGTGGGATG 98492 Query 197802 GGCGAGCATAGGTTTCA 197818 ||| | ||||||||||| Sbjct 98491 GGCCAACATAGGTTTCA 98475 >seq267 Length=25018440 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 197149 CCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTCTTCAGTTTG 197208 || || ||||| || || || ||||| | || || || | ||| || |||||||| ||| Sbjct 579856 CCTATCACCACGAGGTCTAGGGTGTCACCCATGCCATCGAGGTAGTCCTTCTTCAGCTTG 579797 Query 197209 AGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGGGTCTTGATC 197268 |||||| | || |||||||||||||| ||||| || | | |||| |||||| | | Sbjct 579796 AGCCAGTTGTGCGACCTCTTGGCAATCTCATAGGTGGCATCAGCATCCAAGGTCTTTACC 579737 Query 197269 ATCAATCCCTCGCA 197282 |||| |||||||| Sbjct 579736 ATCAGCCCCTCGCA 579723 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 197149 CCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTCTTCAGTTTG 197208 || || ||||| || || || ||||| | || || || | ||| || |||||||| ||| Sbjct 647918 CCTATCACCACGAGGTCTAGGGTGTCACCCATGCCATCGAGGTAGTCCTTCTTCAGCTTG 647977 Query 197209 AGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGGGTCTTGATC 197268 |||||| | || |||||||||||||| ||||| || | | |||| |||||| | | Sbjct 647978 AGCCAGTTGTGCGACCTCTTGGCAATCTCATAGGTGGCATCAGCATCCAAGGTCTTTACC 648037 Query 197269 ATCAATCCCTCGCA 197282 |||| |||||||| Sbjct 648038 ATCAGCCCCTCGCA 648051 Score = 87.8 bits (96), Expect = 2e-12 Identities = 230/343 (67%), Gaps = 10/343 (3%) Strand=Plus/Plus Query 197424 GACCTGAGACACTCCGTTCATGTACAACACGTCAAAAGCAAAGACGCACACCTGGACGGT 197483 |||| ||||| |||| | | ||| | | |||||| ||| | |||||||| || Sbjct 648193 GACCAGAGACTCTCCACTGAGGTAGATGAGGTCAAAGGCACATGGACACACCTGCACCTG 648252 Query 197484 TATCTCTTCTTCCTTGACATCTTTACGTTTTCTGGTCGCCAGCTTTTGAAAGGGAAGGAT 197543 || ||| | | || ||||| ||||| | || | ||| ||| || || |||| Sbjct 648253 GATTTCTGCAGTGTCTACTTCTTTCCGTTTGCGAGTGGTTAGCACTTGTAATGGCTGGAT 648312 Query 197544 CTGCTTCTTCTCAACGTCCCAAGCAACTGCCTCAGCGTCCAAGATGAAAGACTTCACTCC 197603 |||||| || || ||||||||| || || ||| ||||| ||| || || | ||| Sbjct 648313 CTGCTTTTTTTCCCAGTCCCAAGCCACAGCTTCAT-GTCCAGGATAAAGGATGTGACTGA 648371 Query 197604 CTCG---TTGATCGATTGGGGAAGCCTATTGATTATGTCGGGGTACTTCTCGGTGTTATT 197660 | || ||| ||||||| || | ||| ||||||||||||||| | |||| | Sbjct 648372 GGGGAGTTTAATC--TTGGGGATGCGGCT-GATGATGTCGGGGTACTTCCCCATGTTGTC 648428 Query 197661 TTCAGAGTTGCGGCTAAAAATTCTAATCTTCCCTCCCTCCATGTAG-TGAATCTGAGCCC 197719 ||| || | ||| || || | | || ||| || || | | || || | ||| |||| Sbjct 648429 TTCCTGATTCCTGCTGAAGATCTTCACCTCCCCACCTTCTA-GAAGATGGACCTGTGCCC 648487 Query 197720 TCTCTCCGTCATACTTGTACTCGCAAGAAAAGACAG-CTCCTT 197761 ||| || || || ||||||||||| | |||| | | |||||| Sbjct 648488 TCTACCCATCGTATTTGTACTCGCAGGTAAAGGCTGCCTCCTT 648530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676703114495280