Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21]
3,131 sequences; 2,716,396,567 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq1 111 3e-19
seq5 91.5 3e-13
>seq1
Length=88624873
Score = 111 bits (122), Expect = 3e-19
Identities = 96/119 (81%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214
||||||| |||||||||| ||||||||||| ||| || |||| || || |||| ||
Sbjct 4804383 TCGTCCCTGCTGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCAGGAGGCCTCTCTTCTTC 4804324
Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273
|||||||| || ||||| || || || |||||||| | ||||||||| |||||||| ||
Sbjct 4804323 AGCCAGAAGATAGCCGCAAAGGACCCCGAGAAGAACACGCCCTCCACGGCCGCGAAGGC 4804265
>seq5
Length=4632403
Score = 91.5 bits (100), Expect = 3e-13
Identities = 89/112 (79%), Gaps = 2/112 (2%)
Strand=Plus/Minus
Query 213540 ATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCG 213599
|| || |||||||||||||||||| ||| || ||||||||||| ||||| |||| ||
Sbjct 3940718 ATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTGGTTGCTCTTT-CG 3940660
Query 213600 TTGGCAG-AATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGAC 213650
| ||| |||| |||||||||||||| |||| || |||||| ||| |||
Sbjct 3940659 ATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCCGTCTCTGTCTGAGAC 3940608
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931496342135040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |