Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1 111 3e-19 seq5 91.5 3e-13 >seq1 Length=88624873 Score = 111 bits (122), Expect = 3e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 ||||||| |||||||||| ||||||||||| ||| || |||| || || |||| || Sbjct 4804383 TCGTCCCTGCTGATGAGCTCGTTGGAGAAGGTGAGGCCGGGCAGGAGGCCTCTCTTCTTC 4804324 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||||||| || ||||| || || || |||||||| | ||||||||| |||||||| || Sbjct 4804323 AGCCAGAAGATAGCCGCAAAGGACCCCGAGAAGAACACGCCCTCCACGGCCGCGAAGGC 4804265 >seq5 Length=4632403 Score = 91.5 bits (100), Expect = 3e-13 Identities = 89/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 213540 ATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCG 213599 || || |||||||||||||||||| ||| || ||||||||||| ||||| |||| || Sbjct 3940718 ATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTGGTTGCTCTTT-CG 3940660 Query 213600 TTGGCAG-AATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGAC 213650 | ||| |||| |||||||||||||| |||| || |||||| ||| ||| Sbjct 3940659 ATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCCGTCTCTGTCTGAGAC 3940608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931496342135040