Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq29 123 5e-23 seq1 111 3e-19 >seq29 Length=3441549 Score = 123 bits (136), Expect = 5e-23 Identities = 105/127 (83%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||||||||||||||| ||||| ||||||||||| ||||| |||||| | ||||||| Sbjct 3375271 TGGTAGCCTTTGCTGCCGTGGAAGGCATCTTTTTTTCTGGTTCTTTTGCGTCGATCTTCT 3375212 Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 |||| ||| | | |||||| ||||||||| || ||||||||| || ||||||||||| Sbjct 3375211 GGCTGAAGAA-ACGGGGACTCATGCCCGGCCTCACCTTTTCCAATGAACTCATCAGCAGA 3375153 Query 26002 GACGAGG 26008 || |||| Sbjct 3375152 GATGAGG 3375146 >seq1 Length=88624873 Score = 111 bits (122), Expect = 3e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||| ||||| || || ||||||||| | || ||| || || |||||||| ||||||| Sbjct 4804260 TGGTGGCCTTCGCGGCCGTGGAGGGCGTGTTCTTCTCGGGGTCCTTTGCGGCTATCTTCT 4804319 Query 25943 GGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGG 26002 |||| ||| ||| || | ||||||| || ||| |||||||||||||||||||||| Sbjct 4804320 GGCTGAAGAAGAGAGGCCTCCTGCCCGGCCTCACCTTCTCCAACGAGCTCATCAGCAGGG 4804379 Query 26003 ACGAGG 26008 |||||| Sbjct 4804380 ACGAGG 4804385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928808447336640