Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq111 109 4e-18 seq222 100 2e-15 seq789 95.1 8e-14 seq322 91.5 1e-12 seq1000 87.8 1e-11 seq52 87.8 1e-11 seq200 86.0 4e-11 >seq111 Length=37056987 Score = 109 bits (120), Expect = 4e-18 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || ||||||| ||||| ||||||||||| ||||| || || || || ||||||| Sbjct 25386654 ATGCTGTGGTTACTGTGCCAGCTTATTTTAATGACTCTCAGCGCCAGGCTACCAAAGATG 25386713 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || | ||||| ||||||||||| | | ||||| ||||| |||||||| || || Sbjct 25386714 CTGGGACCATTGCTGGTCTTAATGTACTTAGAATTATCAATGAGCCAACAGCTGCTGCTA 25386773 Query 474855 TTGCTTATGG 474864 |||| ||||| Sbjct 25386774 TTGCCTATGG 25386783 Score = 93.3 bits (102), Expect = 3e-13 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 |||| |||||| | || || || ||| ||||| | ||| | || |||| || || | Sbjct 25385912 TTGGCATTGATCTTGGCACCACCTACTCCTGTGTGGGTGTCTTCCAGCATGGAAAGGTGG 25385971 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || ||||||||||| || || ||| |||| || ||| ||||| |||| ||||| | Sbjct 25385972 AGATCATTGCCAATGATCAGGGAAATCGAACCACTCCAAGTTATGTCGCTTTCACTGACA 25386031 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAG 474488 | |||| || ||||| |||||||| ||| | |||| Sbjct 25386032 CCGAACGACTGATTGGGGATGCTGCAAAAAACCAAG 25386067 Score = 89.7 bits (98), Expect = 3e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 290842 AGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGAATC 290901 ||| |||||||| ||||| |||||||| | ||||| |||||| ||||| | | | ||| Sbjct 25386769 AGCAGCTGTTGGCTCATTGATAATTCTAAGTACATTAAGACCAGCAATGGTCCCAGCATC 25386710 Query 290902 TAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGCTTT 290958 | || |||||||| || | |||||||||||||| || || |||| ||||| || Sbjct 25386709 TTTGGTAGCCTGGCGCTGAGAGTCATTAAAATAAGCTGGCACAGTAACCACAGCATT 25386653 >seq222 Length=26775304 Score = 100 bits (110), Expect = 2e-15 Identities = 180/263 (68%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 |||| | |||| | || || || ||| ||||| | ||| | || |||| ||||| | Sbjct 7923881 TTGGCACTGATCTTGGTACCACCTACTCCTGTGTGGGTGTCTTCCAGCATGGAAAAGTGG 7923822 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || ||||||||||| || | ||| ||| || ||| ||||| ||| ||||| | Sbjct 7923821 AGATCATTGCCAATGATCATAGAAATTGAATCACCCCAAGTTATGTCGTTTTCACTGACA 7923762 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | | |||||| ||||| ||| ||||| ||| || || | ||||| Sbjct 7923761 C----CAAATGACTGGAGACGCTGCAAAAAATCAAATAGCAATGAACCCCATCAATACAG 7923706 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 |||||||||| || ||||||| ||| ||||||||| | |||||| ||||||| Sbjct 7923705 TTTTTGATGCCAAGTATCTGATTGGATGTAGATTTGATGATGCTGTTGTCCAGTCTGATA 7923646 Query 474573 TGCGTCATTGGCCTTTTAAGGTG 474595 || | | |||| || | |||| Sbjct 7923645 TGAAGCGTCGGCCCTTCATGGTG 7923623 Score = 93.3 bits (102), Expect = 3e-13 Identities = 88/111 (79%), Gaps = 1/111 (1%) Strand=Plus/Minus Query 474752 CCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGT 474811 ||||| || |||||||||||||| | ||| ||||| | |||||| |||| ||||| ||| Sbjct 7923468 CCAGCTTACTTTAATGATTCTCAGCATCAGGCAACCACAGATGCTGGAACTATTGCTGGT 7923409 Query 474812 CTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 |||||||| | | ||||| ||| |||||||||| || || |||| ||| Sbjct 7923408 CTTAATGTACTTAGAATTATCAAT-AACCAACAGCTGCTGCTATTGCCTAT 7923359 >seq789 Length=7921018 Score = 95.1 bits (104), Expect = 8e-14 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 480564 ACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTT 480621 |||||||| || || ||| |||| || || ||||||| | ||| | ||||| Sbjct 5847172 ACAAGATGGAGAGTGGACTCCCTTTG--AATGTTGTAATCAGACAAAGTGCGTCCATCTT 5847115 Query 480622 CAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTT 480681 | |||||||| ||| |||| || || | ||| ||||||||||||||||||||||| |||| Sbjct 5847114 CCAGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCTT 5847055 Query 480682 GAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTT 480741 | ||||| || ||| ||| ||||| || | | | | | ||||| || || Sbjct 5847054 GGATCTTGGCCTTTACATTTTCTATAGTGTCGGAGGGCTCAACCTGGAGGGTGATGGTCC 5846995 Query 480742 TACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || || |||||||| || Sbjct 5846994 TCCCCGTAAGGGTTTTTACGAAAATCTG 5846967 >seq322 Length=21489822 Score = 91.5 bits (100), Expect = 1e-12 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 480564 ACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTGT-TATCTTC 480622 ||||||||||| || || || || || ||||||| | || | ||| |||||| Sbjct 7411873 ACAAGATGAAGAGTGGACTCCTTTTTAATGTTGTAATCAGACAAAG-TATGTCCATCTTC 7411931 Query 480623 AAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTG 480682 |||||||| ||||||| || || | ||| ||||||||||||||||||||||| || || Sbjct 7411932 CAGTTGCTTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTG 7411991 Query 480683 AATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTT 480742 ||||| || ||| ||| ||||| || | || ||| || || | || || || Sbjct 7411992 GATCTTGGCCTTTACATTTTCTATAGTGTCCAGGGGTTCAGTCTCGTGGATGATGGTCTT 7412051 Query 480743 ACCGGTGAGAGTCTTAACGAAAAT 480766 || || | || || || ||||| Sbjct 7412052 CCCTGTAAAGGTTTTTACAAAAAT 7412075 >seq1000 Length=59189873 Score = 87.8 bits (96), Expect = 1e-11 Identities = 189/280 (68%), Gaps = 7/280 (3%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| |||| |||||| || || || ||| ||||| | || | | || | || Sbjct 42123063 TGCAGTTGGCATTGATCGTGGCACCACCTACTTCTGTGTGGGCGTCTTCTATCATAGAAA 42123004 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| || ||||| ||| ||||| || ||| || | || ||| |||| | |||| || Sbjct 42123003 AGTGGAGATAATCACCAGTGACCCGGGAAATCGAGCCACTCCAAGTTATGCTGCTTTCAC 42122944 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 ||| ||| |||| | || ||||||||||| | | |||||| ||| || || | Sbjct 42122943 TGACACTCAACAATTGATCGGAGATGCTGCAAGACATCAAGTGGCAAGGAACCCCACCA- 42122885 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTG--TCCAA 474565 | ||||||| ||| || |||||| | || | |||||| ||||| |||| Sbjct 42122884 -GCAATTTTTGGTGCCAAGCATCAGATTGGACATAGATATGATGA---CACTGTTTCCAG 42122829 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTG 474605 ||||||||| |||||||| || | |||| | |||| || Sbjct 42122828 TCTGATATGAAGCATTGGCCCTTCACGGTGGTGAATGATG 42122789 >seq52 Length=2480672 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/127 (77%), Gaps = 3/127 (2%) Strand=Plus/Minus Query 480564 ACAAGATGAAGTGT-ACTTTCTTTAGAAACATTATAATCAGCTAGAGTTC-TGTTATCTT 480621 ||||||||||| || | | |||| ||| || ||| ||| | ||| | | ||||| Sbjct 411645 ACAAGATGAAGAGTGAACTCCTTTTGAATG-TTGTAACCAGACAAAGTACATCCAATCTT 411587 Query 480622 CAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTT 480681 | |||||||| |||||||| || || | ||| ||||||||||||||||||||||| || | Sbjct 411586 CCAGTTGCTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTATCCT 411527 Query 480682 GAATCTT 480688 | ||||| Sbjct 411526 GGATCTT 411520 >seq200 Length=27928671 Score = 86.0 bits (94), Expect = 4e-11 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 475877 GTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACT 475936 ||||| |||| ||| ||| ||| || | || ||||||| || ||||| | ||||| Sbjct 8940269 GTACTGCTTGATGTATGTCCCCTTACACTTGGCATTGAAACTGTGGGAGGTGTCATGACC 8940328 Query 475937 AATCTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTAT 475996 || || ||| ||||| ||| |||| ||| || || | | |||||||| | Sbjct 8940329 AAACTGATTCCAAGAAACACTGTAGTCCCTACCAAGAAGTCTCAGATCTTTTCCACAGCT 8940388 Query 475997 TCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGT 476038 |||||||||||| ||||||| || ||| || ||| ||||||| Sbjct 8940389 TCTGATAATCAACCAACTGTTACAATCAAAGTCTATGAAGGT 8940430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268044896218388