Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq134 333 3e-86 seq289 138 1e-27 seq3 125 8e-24 seq444 105 8e-18 >seq134 Length=33920511 Score = 333 bits (368), Expect = 3e-86 Identities = 668/986 (68%), Gaps = 11/986 (1%) Strand=Plus/Minus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 || |||||||| || |||||||| |||| ||| || | ||| ||||| ||| || || Sbjct 27408305 TGCCGCAGATGCTCATCCAGACACTGGATGGCAAAGAGGTCGACGTCCATGTCAAACTTG 27408246 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || || | ||||| || | || ||||| || ||| || | || || | | Sbjct 27408245 TTGGCAAAAAAGTGGTGT---TTGCGCAGCATCCACGTCAAGTCCCCAGCTCCAAAAATG 27408189 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || ||| |||| || || || | || || || || | || || || || ||| Sbjct 27408188 CACACGCTGCGTACATGGACCCCATCACACGGGGGATAGGGCGCGCCCTTGTTCAGGTCC 27408129 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 ||||| |||||||||||| || |||||||| | ||||||||||| || |||||| Sbjct 27408128 CCTTCAAGGTACTGCCACTTGACGAACCTGGCCACGGCCTGCATGTCAGATAGGTCGTAC 27408069 Query 160287 TTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346 |||| ||||||| | || || || | | || || | || | |||||||| || Sbjct 27408068 TTGTGGTTCAGGGGCAGGGAGCCTGGGGCCTCAGGGATCCTTTGGATCGTGGCCCAGAGA 27408009 Query 160347 TGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT-TAACCTGTC 160405 | || || |||||||||||||| | | ||| |||||||||| | ||| | | | Sbjct 27408008 TACTCATCAGGGCTGTACGTGTCTTGTGCCCACTCCATGAACTTCCGGATGTCTTCATTT 27407949 Query 160406 CCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATAT 160465 | ||| || | || || ||| | || |||||||| ||||| || ||||| | Sbjct 27407948 TC-CAGCACATAGCCCACATACTCCCTGCTGACCACAAAGTAGGCGCTCCCTGAGAAAAG 27407890 Query 160466 CGGTAT---GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTT 160522 ||| | | | |||| |||| |||| || |||| | || | || | Sbjct 27407889 AGGTGTTTTGAGCGGAGGCTGCGT---TTTGGGGGTCCCCGTGTCTGTCAGCTTCCCGTC 27407833 Query 160523 CACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTC 160582 || | || | || |||||||||| | ||||| | |||||| |||||||| Sbjct 27407832 GACAACTGCATAGTGCCTCTTCCACCTTTCTGCTTTGTGGGATGGCATCTTCTCCGTCTC 27407773 Query 160583 TAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAG 160642 |||||||| |||| || ||| || |||| | |||| || || ||||| || || | Sbjct 27407772 CAGACTGTTTTCACCCATGAACGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAAT 27407713 Query 160643 CGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAG 160702 ||||| || | || || | ||| |||| ||||||||| | |||||||| || || Sbjct 27407712 GGGAAAATCCATCCCACAAAGGTTGATCAGGTACTTCCAGTCCGCGCTCATTCTGTAGAG 27407653 Query 160703 GTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTC 160762 |||| ||||||| || | || |||||||| |||||||| || ||||| || ||| |||| Sbjct 27407652 GTCCTTCATGCAGTTCAGGTCAGCCTGCACCCGGCTCCACGATGCGTAGACCACGCTCTC 27407593 Query 160763 TAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAA 160822 || | ||||||||||||||| || |||||| ||| |||| || |||||| | Sbjct 27407592 CAGCTGACTGGCCACAAAGACATTCCTGAAACAGGACGCGATGCCTTTCACCGCGGCTAT 27407533 Query 160823 GAACATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 ||| | || | |||| |||||| || | |||||| | ||||||||| || || Sbjct 27407532 GAAGGAGTCCTCTGATTTTCTGTCCACATGGATGCAATAGAAATTCTGAGGCATATAAAT 27407473 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 |||||| || | ||| || | |||||| || || ||||||| ||| || ||||| || || Sbjct 27407472 GGCCCTTAGAAGCCTGTCAAGCATCTCGATTTTGTGATGGACCACTATGGAGTACGCAAT 27407413 Query 160943 CGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAA 161002 ||| || | | |||||| || |||| | || | ||| || ||| ||||||| || Sbjct 27407412 CGGGAAGCCTGCCTCCTCTTTGCTAAGGGGTTCCGTGATGTATTTGCGCATCTTGATGAA 27407353 Query 161003 ATAATCACAATCCCGCGTCATGTTGA 161028 | || |||| |||||||||| Sbjct 27407352 GGAGGTGCAGTCCCTGGTCATGTTGA 27407327 >seq289 Length=23972852 Score = 138 bits (152), Expect = 1e-27 Identities = 149/197 (76%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 167906 TCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTTCCTACTTGACTCTTTGGATCTTT 167965 |||||| || || |||| ||| |||||||| || || || |||||||| | |||||| Sbjct 13837457 TCCCAAGTGCAGGACCTGGCAGATCACCTCC---TTCCCAACCTGACTCTTGGCATCTTT 13837401 Query 167966 TACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTGCGATGTAAAACGGTTTTCGTGCT 168025 || || | ||||||||| ||| ||| || ||||| |||| ||||| | | ||| | Sbjct 13837400 GACGTGGAGAATGCTAGTGACAGATGTGGTGCCATTAGGATGCAAAACACTCTCAGTGGT 13837341 Query 168026 GTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATTACAGGAGCGGGTCGTGCTGTAGC 168085 |||||||||||||| || || ||||||||| | || ||||| || || || || || || Sbjct 13837340 ATTCTCAATCCCTGACCCAGCAACCTTCCAGGAGATCACAGGGGCCGGGCGGGCAGTGGC 13837281 Query 168086 AGAGCAGGTAATATTTA 168102 |||||| || || |||| Sbjct 13837280 AGAGCAAGTGATGTTTA 13837264 >seq3 Length=4952767 Score = 125 bits (138), Expect = 8e-24 Identities = 567/883 (64%), Gaps = 22/883 (2%) Strand=Plus/Minus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| || || || || |||||||||||| ||||| || |||||||||| ||| |||| Sbjct 2814034 GTCAAACTTGTTGGCCAACAGATGGTGA---TTCTGCAGCATCCAGTGCAGGTCCCCGGC 2813978 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| | | ||||| || || ||| || || |||||| || | || || | Sbjct 2813977 CCCATAAATGCAGATGGCCCGCCGGTGGACCCCAGAGCAAGGTCCATAAGGTGCCCCCTG 2813918 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 | |||||| || | | ||||||||| || | |||||| || || |||||| || Sbjct 2813917 GCTGATGTCACCCTCATGTTGCTGCCACTTGACCAGCCTGGCAATGGCGGTCATGTCCGA 2813858 Query 160277 GGTGTCGTATTTGTACAT-CAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGG 160335 | |||| || ||| ||| || ||| | ||||| | | ||| ||||| |||| Sbjct 2813857 GATGTCATACTTGG-CATGCAAGGGCGAAGAGCCGGGCATCCAGGGGGCCCGCTGGAGGG 2813799 Query 160336 TGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACT-CTCCG 160394 ||||||| || |||||||| || ||||| ||||| || |||||| || | || || | Sbjct 2813798 TGGCCCAGAGATGTTCGTCAGGACTGTAGGTGTCTTTCACCCATTCGATCAGCTGCTGGG 2813739 Query 160395 ATTAACCTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTG 160454 ||| | || || |||||| ||| || | | | |||| ||| || || Sbjct 2813738 ATTTA-GGGTTATTTAGGACGTGATGGACGAAGTCCCGAGAAGCCACAATGTAGGCATTG 2813680 Query 160455 CCGGAGAATATCGGTATG-GGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACAC 160513 |||| ||| || | || | ||| ||| || | || || | || | ||| | ||| Sbjct 2813679 CCGGTGAACATGGTTACGTTGTA-AGGGGGAGGCTCCTTCTTCTTGCTGGTTATGTACAA 2813621 Query 160514 CACTCCTTTCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGT--GCGGTGGCATG 160571 | | ||||||| ||| | | ||||| | | | |||| || ||| | Sbjct 2813620 CTTGTCCTTCACCA---CGTAGTGATATTTCCATCGGGTTTTTTTGTACTCGCTGG--GG 2813566 Query 160572 CGTTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGG 160631 ||| | ||| | ||||| |||| | | |||| | ||| ||||| | Sbjct 2813565 ATTTCTGACTCCATGCTGTTCTTCCCGTTCAACATCCTCAGGGCCCGGACCATCTCAGCG 2813506 Query 160632 TTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTC 160691 || ||||| | |||||||| || || || || | || ||| |||| ||| || Sbjct 2813505 TTGGTCTTTATGGGAAAGTCTGTCCCACAGGTATTCAGCAAGTAGGTCCA--CCGCACTG 2813448 Query 160692 AGGTC--GTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGT 160749 || | ||| |||| |||||| || | || |||||||| | | |||||| |||| Sbjct 2813447 GACTCCGGAGCAAGTCCTCCATGCAGTTCAGGTCAGCCTGCACCCTGGACCAGGAGGCGT 2813388 Query 160750 ACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCA 160809 | || ||| | || || ||||| | |||||||| ||| || || |||| || Sbjct 2813387 AAACCACGGGAACCAGCTTGCTGGCTATGAAGACGTTTGGGAAGCAGGAAGCGATGGCCC 2813328 Query 160810 CCACCGCCAGAAAGAACATCTTATCCGCCTTTC-GGTCCACGTGCACGCAATACAGGTTC 160868 || ||| |||||| || | |||| ||||||||| | || |||| ||| Sbjct 2813327 TGACTGCCTCTTGGAACAT-TTCTGGAGATTTCTTGTCCACGTGGATACAGTACACATTC 2813269 Query 160869 TGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACG 160928 || ||| ||| | || | |||| |||||| || |||| || || | || | ||| Sbjct 2813268 TGCGGCATGTACACAGCTCGCAGCAGCCTCTCAAAGTTCTCGATTTTCTCGTGAACCACC 2813209 Query 160929 ATAGAGTAGGCTATCGGAAACTCGGTCTCCTCGCGACTCAGGG 160971 |||||||| || || || || || | |||||| ||||||| Sbjct 2813208 ATAGAGTACGCGATGGGGAAGTCTGACTCCTCTTTGCTCAGGG 2813166 >seq444 Length=14007822 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 176235 TATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGTGGA 176294 || ||| |||| |||| || |||| ||| || | ||||| || || | || || ||| Sbjct 9610863 TACTTTGCTAGCTCACTGGGAGAGTTATAGTCTTCTACATGAATGAAAGAGTCTGCCGGA 9610804 Query 176295 ATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCTAAT 176354 || || |||||||| |||| ||||| ||||| | ||| | ||||| | | || || Sbjct 9610803 ATATAATTTTCATAGTTTTCCCTGGATGGTCCCAGAACAACAGGTACAGATCCAGCCAAG 9610744 Query 176355 AATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAAAGCTAAA 176414 || | |||| |||||||| ||||| || ||||||||||||||||||||| | | Sbjct 9610743 AAAGCATTATAGAGCTTTTCTGTTATGTAATCTTTGTGAATTGAGTTTTCAAAAGAGAGA 9610684 Query 176415 TAGAACTTACA 176425 || || ||||| Sbjct 9610683 TAAAATTTACA 9610673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577196609083560