Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21]
3,131 sequences; 2,716,396,567 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq578 91.5 3e-13
>seq578
Length=10717883
Score = 91.5 bits (100), Expect = 3e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
|||||| || ||||| | || | || | ||||| |||||| ||| || || |||||
Sbjct 1250990 ACCACCCCTCAGACGGAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGA 1250931
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
| || || |||| |||| || || || |||||||| | ||||| || ||||| ||
Sbjct 1250930 AAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGG 1250871
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|| ||||||||||| || || || || ||||| || | || | || ||
Sbjct 1250870 AATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCAC 1250811
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||| || || ||||| || ||||| | ||| || | || ||||||||
Sbjct 1250810 TTCCAGGGTGATGGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 1250763
Score = 84.2 bits (92), Expect = 4e-11
Identities = 162/236 (69%), Gaps = 6/236 (3%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| |||||||| || || | || | || | ||| | |||||| ||| || || |||
Sbjct 1250536 ATCCCACCTCTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCA 1250477
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | || || |||| |||| || || || |||||||| | ||||| || ||||||
Sbjct 1250476 GAAAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGT 1250417
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT---AGTTATAGAATCTGACGAT 192483
|| || ||||||||||| || || || | || ||||| ||| | | ||| |
Sbjct 1250416 GGAATGCCTTCTTTATCCTGGATCTTGTCCTTCACATTCTCAGTGGT-GTCGCTG--GGC 1250360
Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| || || || | ||||| || ||||| | ||||| | || || ||||||||
Sbjct 1250359 TCCACCTCCAGGATGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATTTGCATTTT 1250304
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984440506661850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |