Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq578 91.5 3e-13 >seq578 Length=10717883 Score = 91.5 bits (100), Expect = 3e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| || ||||| | || | || | ||||| |||||| ||| || || ||||| Sbjct 1250990 ACCACCCCTCAGACGGAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGA 1250931 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| |||| || || || |||||||| | ||||| || ||||| || Sbjct 1250930 AAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGG 1250871 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||||||||| || || || || ||||| || | || | || || Sbjct 1250870 AATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCAC 1250811 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| || || ||||| || ||||| | ||| || | || |||||||| Sbjct 1250810 TTCCAGGGTGATGGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 1250763 Score = 84.2 bits (92), Expect = 4e-11 Identities = 162/236 (69%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || || | || | || | ||| | |||||| ||| || || ||| Sbjct 1250536 ATCCCACCTCTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCA 1250477 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || || || |||||||| | ||||| || |||||| Sbjct 1250476 GAAAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGT 1250417 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT---AGTTATAGAATCTGACGAT 192483 || || ||||||||||| || || || | || ||||| ||| | | ||| | Sbjct 1250416 GGAATGCCTTCTTTATCCTGGATCTTGTCCTTCACATTCTCAGTGGT-GTCGCTG--GGC 1250360 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || || | ||||| || ||||| | ||||| | || || |||||||| Sbjct 1250359 TCCACCTCCAGGATGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATTTGCATTTT 1250304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984440506661850