Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq322 140 4e-27 seq223 140 4e-27 seq667 118 1e-20 seq334 98.7 1e-14 seq800 95.1 1e-13 seq29 91.5 2e-12 >seq322 Length=21489822 Score = 140 bits (154), Expect = 4e-27 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| | ||| || ||||||||||| |||| || Sbjct 20368222 GCTTGGCCAGCTCCCCGGGCAGCAACAGCCTCACAGCAGTCTGGATCTCCCGCGACGTGA 20368281 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| ||||||| |||| | Sbjct 20368282 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGCGATGCCTCGCCTGCGATGCGCTCGAAGA 20368341 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| || ||||| ||| |||| Sbjct 20368342 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAAATGCCTGTGTCTGGGT 20368401 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 ||||||| |||||||||||||| Sbjct 20368402 GCACCTGTTTGAGCACCTTGTA 20368423 Score = 91.5 bits (100), Expect = 2e-12 Identities = 148/209 (71%), Gaps = 8/209 (4%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||| ||||| || ||||||||||| || || || Sbjct 19938631 GCTTGGCCAGCTCTCCGGGCAGCAGCAGCCGCACAGCCGTCTGGATCTCCCG--TGATGA 19938574 Query 1254403 TCGTGTTG--CGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGC--GGTCG 1254458 |||| |||||||| |||| ||||| || |||||| |||| | | || Sbjct 19938573 AATGGTTGAACGCTTGTTGTAGTGTGCCAGGCGTGATGCCTCGCA--CGATACACGTTCA 19938516 Query 1254459 ATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCG 1254518 | ||||| |||||| || |||| || ||| | ||| |||||||||| ||| Sbjct 19938515 AATATGTCAGAGACAAAGGAATTCAAGATGCTCATAGCCTTTGAGGAGATGCCCGTGTCT 19938456 Query 1254519 GGGTGCACCTGCTTGAGCACCTTGTAGAT 1254547 || || |||||||| |||||||||||||| Sbjct 19938455 GGATGAACCTGCTTTAGCACCTTGTAGAT 19938427 >seq223 Length=78341846 Score = 140 bits (154), Expect = 4e-27 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | |||||||||||| ||||||||||| || | || Sbjct 10910852 GCTTGGCCAGCTCGCCTGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCACGGGACGTGA 10910911 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||| ||||| || |||||| ||||||| |||| | Sbjct 10910912 TGGTTGAGCGCTTGTTGTAGTGTGCCAGGCGCGACGCCTCGCCAGCGATGCGCTCGAAGA 10910971 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| |||||||| ||| |||| Sbjct 10910972 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGT 10911031 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 10911032 GGACCTGCTTCAGCACCTTGTA 10911053 Score = 140 bits (154), Expect = 4e-27 Identities = 137/177 (77%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427 |||||||||||| |||||||||||||| | ||| || ||||||||| |||| || Sbjct 10941894 CAGGCGCACGGCCGTCTGGATCTCGCGGGACGTGATGGTCGAGCGCTTGTTGTAGTGTGC 10941953 Query 1254428 CAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAC 1254487 ||| || |||||| ||||||| |||| ||||| ||||| || |||||||||| Sbjct 10941954 CAGGCGAGACGCCTCGCCAGCGATGCGCTCGAAGATGTCATTGACGAAGGAGTTCATGAT 10942013 Query 1254488 CGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 ||| | |||| ||||||||| |||||||||||||||||| ||||||||||| Sbjct 10942014 GCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTA 10942070 >seq667 Length=61152626 Score = 118 bits (130), Expect = 1e-20 Identities = 143/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 1254350 CAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTT 1254409 ||| || ||| ||| | |||| ||||||| || | | ||| | || |||| || Sbjct 599380 CAGCTCCCCGGGCAGCAGCAGGTGCACGGCCGTGGGCACCTCTCCCGACACGATGGTCAA 599439 Query 1254410 GCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTT 1254469 ||||||| | |||||||||| || |||||| || ||||| | |||| |||||||| Sbjct 599440 GCGCTTGCTGTAGTGCGCCAGGCGCGACGCCTCGATGGCGATGTGCTCGAAGATGTCGTT 599499 Query 1254470 GACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1254529 ||| | |||||||||| ||| | |||| || ||||| ||||||||||||||| Sbjct 599500 GACGATGGAGTTCATGATGCCCATGGCCTTGGAAGACATGCCTGTGTCGGGGTGCACCTG 599559 Query 1254530 CTTGAGCACCTTGTA 1254544 ||| ||||||||||| Sbjct 599560 CTTCAGCACCTTGTA 599574 Score = 116 bits (128), Expect = 5e-20 Identities = 132/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 1254368 CAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTTGCGCTTGTTCGAGTGCGC 1254427 |||||||||||| || | | ||| | || ||| || ||||||||| ||||| | Sbjct 587470 CAGGCGCACGGCCGTGGGCACCTCTCCCGACAGGATGGTCAAGCGCTTGTTGTAGTGCAC 587411 Query 1254428 CAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAC 1254487 ||| ||| |||||| || ||||||| || | ||||| ||||| || |||||||||| Sbjct 587410 CAGGCGGGACGCCTCGATGGCGATGCGCTCAAAGATGTCATTGACGAAGGAGTTCATGAT 587351 Query 1254488 CGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 ||| | |||| || ||||| |||||||||||||||||| ||||||||||| Sbjct 587350 GCCCATTGCCTTGGAAGACATGCCTGTGTCGGGGTGCACCTGCTTCAGCACCTTGTA 587294 >seq334 Length=75508170 Score = 98.7 bits (108), Expect = 1e-14 Identities = 101/131 (77%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 1592165 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTT 1592224 ||||| ||| | | || || || || |||||||| |||||||| | |||| ||| || Sbjct 46018067 ACCCTTTTTTAACTTATTCTGGCAGCAAACTACCTAGACATCAAAGGTTTGCTTGATGTT 46018126 Query 1592225 GGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACC 1592284 |||||| |||| ||||| ||||||||||| || | ||||||||| ||||||||| Sbjct 46018127 ACATGCAAGACTGTTGCCAATATGATCAAGGGGAA--AACTCGAGGAGATTCGCAAGACC 46018184 Query 1592285 TTTAACATCAA 1592295 ||||| ||||| Sbjct 46018185 TTTAATATCAA 46018195 >seq800 Length=7643755 Score = 95.1 bits (104), Expect = 1e-13 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||||| |||||||| | |||| ||| || |||||| |||| ||||| Sbjct 3150905 GCAGCAAACTACCTAGACATCAAAGGTTTGCTTGATGTTACATGCAAGACTGTTGCCAAT 3150846 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 ||||||||||| || | || |||||||| |||||||| ||||| ||||| Sbjct 3150845 ATGATCAAGGGGAAAACTCCTGAGGAGATTCGCAAGACTTTTAATATCAA 3150796 >seq29 Length=3441549 Score = 91.5 bits (100), Expect = 2e-12 Identities = 87/109 (80%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 869192 CTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAG 869251 ||||| | ||| ||| ||||| ||||||||||||||| || || ||||| ||||| ||| Sbjct 3375157 CTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCTTCAGCCAGAAG 3375216 Query 869252 AT-GGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || | |||| ||| || || ||||||||||| || ||||| |||||| Sbjct 3375217 ATCGACGCA-AAAGAACCAGAAAAAAAGATGCCTTCCACGGCAGCAAAG 3375264 Score = 89.7 bits (98), Expect = 6e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889 ||||||||| || ||||| | ||||||||||| || || ||||||| ||| | | || Sbjct 3377451 CACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCTTTCTTATACATCTGCCAAATGTCATG 3377510 Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943 ||| ||||||||||| ||||||||| |||||| || | || ||| ||||| Sbjct 3377511 GTATTCGATAGGGAAGATGACAAAGCGCCGGGGGTTCTCTCTCAGCAGTGGTTC 3377564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106882255477527