Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq789 123 2e-23 seq52 120 3e-22 seq87 100 3e-16 seq578 93.3 4e-14 seq889 87.8 2e-12 >seq789 Length=7921018 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | ||||| || || || | || || || ||| | || || || | Sbjct 5846963 GATGCAGATTTTCGTAAAAACCCTTACGGGGAGGACCATCACCCTCCAGGTTGAGCCCTC 5847022 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| |||||| ||||| ||||||||||| || |||||||| ||||| ||||| Sbjct 5847023 CGACACTATAGAAAATGTAAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCTGATCA 5847082 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| | ||||||||| || || || ||||| ||| | | |||| ||||| || Sbjct 5847083 GCAAAGGCTGATCTTTGTTGGTAAGCAACTGGAAGATGGACGCACTTTGTCTGATTACAA 5847142 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||| ||| || || || || | |||||| || | || || || Sbjct 5847143 CATTCAAAGGGAGTCCACTCTCCATCTTGTGTTGAGACTCCGTGGTGG 5847190 >seq52 Length=2480672 Score = 120 bits (132), Expect = 3e-22 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||| ||||| || || ||||| | | || || || | || ||||| || ||| || | Sbjct 411436 GATACAGATTTTCATAAAAACCGTTATGGGGAAGACCACCAC-CTCGAGGTTGAACCCTC 411494 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| ||||||| ||||| |||||||| || || |||||||| ||||| ||||| Sbjct 411495 GGACACTGTAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCA 411554 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT-GTCAGATTATA 24881 ||| | |||||||||| || || || ||||| |||| || || | ||| | ||| | Sbjct 411555 GCAAGGGCTGATCTTTGCTGGTAAGCAACTGGAAGATTGGATGTACTTTGTCTGGTTACA 411614 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 ||||||||||||| | || || || | |||||| || Sbjct 411615 ACATTCAAAAGGAGTTCACTCTTCATCTTGTGTTGAGA 411652 >seq87 Length=1495935 Score = 100 bits (110), Expect = 3e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || || || || || || || || || ||||| || || || Sbjct 1202714 ACAATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGCCC 1202773 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || |||||||||||||| || || || || || || Sbjct 1202774 AGTGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGAC 1202833 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | ||||||| || || || |||||||| ||| | | | | | || || || Sbjct 1202834 CAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTAC 1202893 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||||| || ||||| || || || ||| ||||| |||| Sbjct 1202894 AACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCG 1202931 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || || ||||| || || ||| Sbjct 1202944 GATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAG 1203003 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||||||||| || || || || || || || Sbjct 1203004 TGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCA 1203063 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||| || || || |||||||| ||| | | | | | || || || || Sbjct 1203064 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCCGACTACAA 1203123 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || ||| |||| |||| || | ||||| Sbjct 1203124 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGAGGGGAGG 1203171 >seq578 Length=10717883 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 1250534 GATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 1250593 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| || |||||||| || ||||| || || Sbjct 1250594 CGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCA 1250653 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | |||||||| || || |||||||| ||| | | | || || || || Sbjct 1250654 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAA 1250713 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || || || || || || ||| ||||| |||| Sbjct 1250714 CATCCAGAAAGAGTCCACTCTGCACCTGGTGCTGCG 1250749 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || || || ||||| || ||| Sbjct 1250762 GATGCAGATCTTCGTGAAGACACTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAG 1250821 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||||| || |||||||| || ||||| || || Sbjct 1250822 CGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCA 1250881 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | |||||||| || || |||||||| ||| | | | || || || || Sbjct 1250882 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAA 1250941 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || || || || || || ||| |||| Sbjct 1250942 CATCCAGAAAGAGTCTACTCTGCACCTGGT 1250971 >seq889 Length=60641186 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/209 (71%), Gaps = 8/209 (4%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || |||| || || || || || || || || || ||| Sbjct 60498660 GATGCAGATATTCGTGAAGACCCTAATGGGCAAGACCATCACCCTTGAGGTTGAGCCCAG 60498719 Query 24763 CGACAC-AGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATC 24821 ||||| ||| || | ||| | ||| |||||||||| ||||| || || ||||| | Sbjct 60498720 TGACACCAGTGAGAATGTCAAAGCCAAA--TCCAAGACAAGGAAGGCATCCCACCCGACC 60498777 Query 24822 AACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACATGTCAGATTA 24879 | | | |||| |||||| | |||||||||||||| ||| || | | ||||| || Sbjct 60498778 AGCGGCTCCTGATATTTGCCAGCAAACAGCTGGAGGACGGTCG-GACTC-TCTCAGACTA 60498835 Query 24880 TAACATTCAAAAGGAATCGACACTACACT 24908 |||||||| || || || ||||||| || Sbjct 60498836 CAACATTCAGAAAGAGTC-ACACTACCCT 60498863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449879992132680