Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq223 187 4e-41 seq322 185 1e-40 seq667 147 3e-29 seq29 87.8 3e-11 >seq223 Length=78341846 Score = 187 bits (206), Expect = 4e-41 Identities = 187/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 1485472 TACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATG 1485531 ||||| ||||| |||||||| |||||||| ||||| ||| ||||||| ||||| ||| Sbjct 10910815 TACTTCGTGACCGCCTTGGTGCCCTCTGACACGGCATGCTTGGCCAGCTCGCCTGGCAGC 10910874 Query 1485532 ATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGC 1485591 | |||||||||||| ||||||||||| |||| ||| || ||||||||| | | Sbjct 10910875 AGCAGGCGCACGGCCGTCTGGATCTCACGGGACGTGATGGTTGAGCGCTTGTTGTAGTGT 10910934 Query 1485592 GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 |||||||| |||||| ||||||| |||| ||||||||||| || ||||||||| Sbjct 10910935 GCCAGGCGCGACGCCTCGCCAGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCATG 10910994 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAA 1485711 || ||| | ||| |||||||| ||| ||||| |||||||| ||||||||||| Sbjct 10910995 ATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGTGGACCTGCTTCAGCACCTTGTAC 10911054 Query 1485712 ACA 1485714 ||| Sbjct 10911055 ACA 10911057 Score = 143 bits (158), Expect = 4e-28 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 1485534 CAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGC 1485593 |||||||||||| |||||||||||||||| ||| || ||||||||| | | || Sbjct 10941894 CAGGCGCACGGCCGTCTGGATCTCGCGGGACGTGATGGTCGAGCGCTTGTTGTAGTGTGC 10941953 Query 1485594 CAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAT 1485653 |||||| |||||| ||||||| |||| ||||| ||||| || ||||||||||| Sbjct 10941954 CAGGCGAGACGCCTCGCCAGCGATGCGCTCGAAGATGTCATTGACGAAGGAGTTCATGAT 10942013 Query 1485654 CGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAAC 1485713 ||| | ||| ||||||||| |||||||||||||||||| ||||||||||| || Sbjct 10942014 GCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTACAC 10942073 Query 1485714 AAAGGACGAGTA 1485725 | || ||||| Sbjct 10942074 ATAGATGGAGTA 10942085 Score = 95.1 bits (104), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||| ||||| || ||||||||| ||||||| ||||| ||| Sbjct 10930663 TGTACTTGGTGACCGCCTTGGTGCCCTCCGACACGGCGTGCTTGGCCAGCTCGCCCGGCA 10930604 Query 1485530 TGATCAGGCGCACGGCGGTCTG 1485551 | |||||||||||| ||||| Sbjct 10930603 GCAGCAGGCGCACGGCCGTCTG 10930582 >seq322 Length=21489822 Score = 185 bits (204), Expect = 1e-40 Identities = 188/245 (77%), Gaps = 0/245 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||||||||||||||| ||||| ||||| |||||| ||||||| || ||| ||| Sbjct 20368183 TGTATTTGGTGACGGCCTTGGTGCCCTCGGAGACAGCGTGCTTGGCCAGCTCCCCGGGCA 20368242 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | ||| || ||||||||||| || | ||| ||| ||||||||| | Sbjct 20368243 GCAACAGCCTCACAGCAGTCTGGATCTCCCGCGACGTGATGGTGGAGCGCTTGTTGTAGT 20368302 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||||||||| |||||| ||||||| |||| ||||||||||| || ||||||| Sbjct 20368303 GCGCCAGGCGCGATGCCTCGCCTGCGATGCGCTCGAAGATGTCGTTGACGAAGGAGTTCA 20368362 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| || ||||| ||| ||||||||||| ||||||||||||| Sbjct 20368363 TGATGCCCATGGCCTTGGACGAAATGCCTGTGTCTGGGTGCACCTGTTTGAGCACCTTGT 20368422 Query 1485710 AAACA 1485714 | ||| Sbjct 20368423 ACACA 20368427 Score = 134 bits (148), Expect = 2e-25 Identities = 179/245 (73%), Gaps = 8/245 (3%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| |||||||||||||| || || |||||| ||||||| || ||| ||| Sbjct 19938670 TGTACTTGGTGACAGCCTTGGTACCCTCGGACACAGCGTGCTTGGCCAGCTCTCCGGGCA 19938611 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTG--CGCTTGTTAGT 1485587 | ||| ||||| || ||||||||||| | ||| || |||| |||||||| Sbjct 19938610 GCAGCAGCCGCACAGCCGTCTGGATCTCCC--GTGATGAAATGGTTGAACGCTTGTTGTA 19938553 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGAT--GCGGTCGATCATGTCGTTGACAAACGAG 1485645 | | |||||||| |||||| |||| || || | ||||| |||||| || Sbjct 19938552 GTGTGCCAGGCGTGATGCCTCG--CACGATACACGTTCAAATATGTCAGAGACAAAGGAA 19938495 Query 1485646 TTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACC 1485705 |||| ||| ||| | || |||||||||| ||| || || |||||||| |||||| Sbjct 19938494 TTCAAGATGCTCATAGCCTTTGAGGAGATGCCCGTGTCTGGATGAACCTGCTTTAGCACC 19938435 Query 1485706 TTGTA 1485710 ||||| Sbjct 19938434 TTGTA 19938430 >seq667 Length=61152626 Score = 147 bits (162), Expect = 3e-29 Identities = 181/246 (74%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 1485468 GTTGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCG 1485527 ||||| || ||||||||| |||| ||| | || ||||||||| |||| || || ||| | Sbjct 599333 GTTGTGCTGGGTGACGGCTTTGGGGCCCGCAGACACGGCGTGCTTGGC-AGCTCCCCGGG 599391 Query 1485528 CATGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGT 1485587 || | |||| ||||||| || | | ||| | | |||| || ||||||| | Sbjct 599392 CAGCAGCAGGTGCACGGCCGTGGGCACCTCTCCCGACACGATGGTCAAGCGCTTGCTGTA 599451 Query 1485588 GCGCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | |||||||||| |||||| || ||||| | |||| ||||||||||| | ||||| Sbjct 599452 GTGCGCCAGGCGCGACGCCTCGATGGCGATGTGCTCGAAGATGTCGTTGACGATGGAGTT 599511 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||| | ||| || ||||| |||||||||||||||||| |||||||| Sbjct 599512 CATGATGCCCATGGCCTTGGAAGACATGCCTGTGTCGGGGTGCACCTGCTTCAGCACCTT 599571 Query 1485708 GTAAAC 1485713 ||| || Sbjct 599572 GTACAC 599577 Score = 109 bits (120), Expect = 9e-18 Identities = 132/180 (73%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 1485534 CAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGC 1485593 |||||||||||| || | | ||| | | ||| || ||||||||| | || | Sbjct 587470 CAGGCGCACGGCCGTGGGCACCTCTCCCGACAGGATGGTCAAGCGCTTGTTGTAGTGCAC 587411 Query 1485594 CAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAT 1485653 ||||||| |||||| || ||||||| || | ||||| ||||| || ||||||||||| Sbjct 587410 CAGGCGGGACGCCTCGATGGCGATGCGCTCAAAGATGTCATTGACGAAGGAGTTCATGAT 587351 Query 1485654 CGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAAC 1485713 ||| | ||| || ||||| |||||||||||||||||| ||||||||||| || Sbjct 587350 GCCCATTGCCTTGGAAGACATGCCTGTGTCGGGGTGCACCTGCTTCAGCACCTTGTACAC 587291 >seq29 Length=3441549 Score = 87.8 bits (96), Expect = 3e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362 |||||||| || |||||||||||||||||||| || || ||||||| ||| || ||| Sbjct 3377452 ACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCTTTCTTATACATCTGCCAAATGTCATGG 3377511 Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 || ||| ||||| | |||||||| ||||||||| | ||||| || || Sbjct 3377512 TATTCGATAGGGAAGATGACAAAGCGCCGGGGGTTCTCTCTCAGCAGTGGTTC 3377564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915913341249509