Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq111 147 2e-29 seq222 111 1e-18 seq1 86.0 5e-11 >seq111 Length=37056987 Score = 147 bits (162), Expect = 2e-29 Identities = 368/552 (67%), Gaps = 14/552 (3%) Strand=Plus/Minus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 |||||||| |||||||| || ||||| || | | | | ||| | || ||| |||||||| Sbjct 25387432 GCACCATAAGCAACAGCCTCGTCAGGGTTGATACTCTTATTCAATTCTTTTCCATTGAAG 25387373 Query 281837 AAATTTGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 |||| | ||||||| ||| | ||| |||||||||| || || || || || ||||| Sbjct 25387372 AAATCTTGTAGAAGTT-TCTGGATCTTGGGAATACGAGTAGAACCACCCACCAAGACAAT 25387314 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 ||||| | |||||| || || || || | ||| | | | || || || || || || Sbjct 25387313 GTCATGGATCTGTGACTTGTCAAGCTTAGCATCTCGCAGAGCCTTCTCCACAGGGTCTAG 25387254 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATT 282015 | | | ||||| ||| | | || ||||| ||| ||| | ||||| | | || Sbjct 25387253 AGTGCCACGAAACAGGTCAGCATTCAGCTCTTCAAATCGAGCACGAGTAATGGAGGTATA 25387194 Query 282016 ATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG 282075 | || || ||||| | | ||||||| ||||| | | ||| || ||||| || Sbjct 25387193 GAAGTCGATCCCTTCATAGAGGGAATCAATCTCAATACTGGCTTGGGTGCTGGAAGAGAG 25387134 Query 282076 TGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATT 282131 | | ||||| ||||||||||| || | || | || | || ||| | || | | Sbjct 25387133 GGTTCTCTTAGCTCGTTCACATGCAGTGCGAAGACGGCGGACAGCTCTCTTGTTCTCACT 25387074 Query 282132 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACG 282189 ||| || | |||| || | |||||| || ||| | | ||| | || | || Sbjct 25387073 GAT----GTCCTTCTTATGCTTGCGCTTGAACTCAGCAATAAA--ATGGTTGACCATCCG 25387020 Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249 || ||||||||||| || || || | || | ||| | |||| | |||||| |||| Sbjct 25387019 GTTGTCAAAATCTTCTCCACCTAAGTGGGTGTCTCCAGCTGTAGATTTTACTTCAAAAAT 25386960 Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309 ||||||||||| || | | | |||||| || ||||| || | ||||||||| || Sbjct 25386959 TCCATCTTCAATAGTGAGGATTGACACATCAAAAGTGCCACCTCCTAAATCAAAAATCAG 25386900 Query 282310 TACATTCATTTC 282321 || || |||| Sbjct 25386899 CACGTTTCTTTC 25386888 Score = 116 bits (128), Expect = 3e-20 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| |||| ||||||||| ||||| ||||| |||||||| | ||| Sbjct 25386795 TTTTTGTCTAAGCCATAGGCAATAGCAGCAGCTGTTGGCTCATTGATAATTCTAAGTACA 25386736 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 |||||||||||||| | || |||||||| || || || | || || || |||||||| Sbjct 25386735 TTAAGACCAGCAATGGTCCCAGCATCTTTGGTAGCCTGGCGCTGAGAGTCATTAAAATAA 25386676 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 || || ||||||| || |||| Sbjct 25386675 GCTGGCACAGTAACCACAGCAT 25386654 >seq222 Length=26775304 Score = 111 bits (122), Expect = 1e-18 Identities = 170/240 (71%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 281672 CCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGA 281731 |||||||| ||||| | |||||||||||||| || |||||| | || | | || ||| Sbjct 7922734 CCACCAGCCGTTTCAATACCAAGAGAAAGAGAAGAGACATCTAAAAGCAGCAAATCTTGG 7922793 Query 281732 AGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACA 281791 | |||| | | | ||| ||||| || || |||| ||| |||||||| ||||| Sbjct 7922794 ACATTTTTAGACTTGTCTCCAGATAGAATGGCAGCCTGAACAGCTGCACCATAAACAACA 7922853 Query 281792 GCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGT 281851 ||||||||||| || | | | | | | || ||| |||||||| || | | |||||| Sbjct 7922854 GCTTCATCAGGGTTGATGCTCTTACTCAATTCTTTTCCATTGAAGAAGTCTTGTAGAAGT 7922913 Query 281852 TGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGA 281910 | ||| | ||| |||||| ||| || | || || | ||||| ||||| | |||||| Sbjct 7922914 T-TCTGGATCTTGGGAATATGAGTAGAACTACCCACCAGGACAATGTCATGGATCTGTGA 7922972 Score = 91.5 bits (100), Expect = 1e-12 Identities = 96/125 (77%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | | ||| |||| ||||||||| ||||||| ||| |||||||| | ||| Sbjct 7923345 TTTTTGTCTAAGCAATAGGCAATAGCAGCAGCTGTTGGTT-ATTGATAATTCTAAGTACA 7923403 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 |||||||||||||| |||| |||||| | || || || || ||||| ||||| || Sbjct 7923404 TTAAGACCAGCAATAGTTCCAGCATCTGTGGTTGCCTGATGCTGAGAATCATTAAAGTAA 7923463 Query 282452 GCAGG 282456 || || Sbjct 7923464 GCTGG 7923468 >seq1 Length=88624873 Score = 86.0 bits (94), Expect = 5e-11 Identities = 135/190 (71%), Gaps = 5/190 (3%) Strand=Plus/Plus Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | |||||||| |||| | ||||| |||||||||||||||||| | || | Sbjct 45708428 GTCATGACTCCACCAGCAATTTCAATACCAACAGAAAGAGGAGTGACATCCAAGAGCAGC 45708487 Query 281723 ATATTTTGA--AGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCAC 281780 | || |||| ||||| | ||||| || ||| | | ||| |||| ||| |||| Sbjct 45708488 AAATCTTGAATAGTTTCAGACTTGTTTG--CAGATAGATTGGTTGCCTGAACAGCTGCAC 45708545 Query 281781 CATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT 281840 |||| ||||||| |||||| | || | | | ||| | || ||| ||| ||||||| | Sbjct 45708546 CATAATCAACAGCCTCATCAAGGTTGATCCTCTTATTCAATTCTTTTCCA-TGAAAAAGT 45708604 Query 281841 TTGAAAGAAG 281850 | | ||||| Sbjct 45708605 CTTATAGAAG 45708614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740476681131606