Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq578 168 1e-36 seq789 127 4e-24 seq322 123 5e-23 seq600 104 5e-17 seq889 100 6e-16 seq52 100 6e-16 seq49 91.5 3e-13 seq445 84.2 4e-11 >seq578 Length=10717883 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || |||| ||| || || | |||||||||||| |||||||| || || || ||||| Sbjct 1250990 ACCACCCCTCAGACGGAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGA 1250931 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 ||| | | ||| ||||| || || || || |||||||| || || || || || ||||| Sbjct 1250930 AAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGG 1250871 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| ||||| || ||||| || || ||||| ||||| || || | || || || Sbjct 1250870 AATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCAC 1250811 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || |||||||| |||| ||||| || || |||||||| Sbjct 1250810 TTCCAGGGTGATGGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 1250763 >seq789 Length=7921018 Score = 127 bits (140), Expect = 4e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || | || || || |||||||| | | | | || ||||| ||||| Sbjct 5847166 TGGAGAGTGGACTCCCTTTGAATGTTGTAATCAGACAAAGTGCGTCCATCTTCCAGTTGC 5847107 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||| ||||||| || ||||| ||||| ||||| ||||||||||||||||| ||||| Sbjct 5847106 TTACCAACAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGGATCTTG 5847047 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || || || || || || | | || || ||| | || || Sbjct 5847046 GCCTTTACATTTTCTATAGTGTCGGAGGGCTCAACCTGGAGGGTGATGGTCCTCCCCGTA 5846987 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || ||||| || |||||||| Sbjct 5846986 AGGGTTTTTACGAAAATCTGCAT 5846964 >seq322 Length=21489822 Score = 123 bits (136), Expect = 5e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || | || || |||||||| | | | || ||||| ||||| Sbjct 7411879 TGAAGAGTGGACTCCTTTTTAATGTTGTAATCAGACAAAGTATGTCCATCTTCCAGTTGC 7411938 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||||| || ||||| ||||| ||||| |||||||||||||| || ||||| Sbjct 7411939 TTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 7411998 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || || || ||||| || | || ||||| ||||| Sbjct 7411999 GCCTTTACATTTTCTATAGTGTCCAGGGGTTCAGTCTCGTGGATGATGGTCTTCCCTGTA 7412058 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 || || |||||||| ||| |||| Sbjct 7412059 AAGGTTTTTACAAAAATCGGCAT 7412081 >seq600 Length=10546185 Score = 104 bits (114), Expect = 5e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || || || || || |||||||| | ||| || ||||||||||| Sbjct 4929184 TGAAGAGTCGACTCCTTTTGAATGTTGTAATCAGACAAAATATGTCCATCTTCTAGTTGC 4929243 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || || | |||||| || |||| ||||| ||| | ||| |||||||||| || ||||| Sbjct 4929244 TTACCTGTAAAGATCAGCTTTTGCTGATCAGGAAGAATTGCTTCCTTATCCTGGATCTTG 4929303 Query 82728 GCTTTTACATTTTCAAT 82744 || ||||||||||| || Sbjct 4929304 GCCTTTACATTTTCTAT 4929320 >seq889 Length=60641186 Score = 100 bits (110), Expect = 6e-16 Identities = 148/208 (71%), Gaps = 5/208 (2%) Strand=Plus/Minus Query 82607 GTGCAGAGTAG----ATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTA 82662 |||||| |||| | |||||||| || || || || || ||| | | |||||| || | Sbjct 60498867 GTGCAGGGTAGTGTGACTCTTTCTGAATGTTGTAGTCTGAGAGAGTCCGACCGTCCTCCA 60498808 Query 82663 GTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAA 82722 | ||||| | ||||| || || | || || || || || |||||||| ||||| | Sbjct 60498807 GCTGTTTGCTGGCAAATATCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGA 60498748 Query 82723 TCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGC 82782 | || ||||| ||||| ||| | || ||| | || || || || | || || ||||||| Sbjct 60498747 T-TTGGCTTTGACATTCTCACTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGC 60498689 Query 82783 CTGTCAACGTCTTTACAAATATCTGCAT 82810 | | | ||||| || ||||||||||| Sbjct 60498688 CCATTAGGGTCTTCACGAATATCTGCAT 60498661 >seq52 Length=2480672 Score = 100 bits (110), Expect = 6e-16 Identities = 104/135 (77%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG-TCTTCTAGTTG 82666 || ||||| | || || || || || ||| |||| | | | | || ||||| ||||| Sbjct 411639 TGAAGAGTGAACTCCTTTTGAATGTTGTAACCAGACAAAGTACATCCAATCTTCCAGTTG 411580 Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726 || ||||||||||| || | ||| ||||| ||||| |||||||||||||| || ||||| Sbjct 411579 CTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 411520 Query 82727 TGCTTTTACATTTTC 82741 || ||||||||||| Sbjct 411519 GGCCTTTACATTTTC 411505 >seq49 Length=2534360 Score = 91.5 bits (100), Expect = 3e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 82632 TTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGT 82691 || |||||||| | | | | || ||||| | ||| | |||||||||| || ||||| Sbjct 1109962 TTGTAATCAGACAAAGTACATCCATCTTCCACTTGCATAACAGCAAAGATCAGCCTTTGA 1109903 Query 82692 TGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTAT 82749 |||| ||||| |||||||||||||| ||||||| || |||| |||||| || |||| Sbjct 1109902 TGATTAGGAGGAATTCCTTCCTTATCCTGAATCTCAGCCTTTATATTTTCTATAGTAT 1109845 >seq445 Length=61457488 Score = 84.2 bits (92), Expect = 4e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 60309 AAGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATG 60368 |||| ||||| ||||| ||| |||||||||| || ||||| ||||||||| | || |||| Sbjct 52656630 AAGCGTTTTTTGGAGCCCAGATGAATTCCTTTATTCATGTGATTATGTATTCATACTATG 52656571 Query 60369 GTATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTA 60428 | | | || | ||| || | || | |||||| | ||||||||||| || || || | Sbjct 52656570 GATTAACTGCATTTGGCCCGTGGATTCAGAAGTATCTCTGGTGGAAGCGGTACCTGACCA 52656511 Query 60429 T 60429 | Sbjct 52656510 T 52656510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981787813081409