Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21]
3,131 sequences; 2,716,396,567 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq578 168 1e-36
seq789 127 4e-24
seq322 123 5e-23
seq600 104 5e-17
seq889 100 6e-16
seq52 100 6e-16
seq49 91.5 3e-13
seq445 84.2 4e-11
>seq578
Length=10717883
Score = 168 bits (186), Expect = 1e-36
Identities = 174/228 (76%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
||| || |||| ||| || || | |||||||||||| |||||||| || || || |||||
Sbjct 1250990 ACCACCCCTCAGACGGAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGA 1250931
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
||| | | ||| ||||| || || || || |||||||| || || || || || |||||
Sbjct 1250930 AAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGG 1250871
Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762
|| ||||| ||||| || ||||| || || ||||| ||||| || || | || || ||
Sbjct 1250870 AATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCAC 1250811
Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || || |||||||| |||| ||||| || || ||||||||
Sbjct 1250810 TTCCAGGGTGATGGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 1250763
>seq789
Length=7921018
Score = 127 bits (140), Expect = 4e-24
Identities = 150/203 (74%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| ||||| || || | || || || |||||||| | | | | || ||||| |||||
Sbjct 5847166 TGGAGAGTGGACTCCCTTTGAATGTTGTAATCAGACAAAGTGCGTCCATCTTCCAGTTGC 5847107
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| ||| ||||||| || ||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct 5847106 TTACCAACAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGGATCTTG 5847047
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| ||||||||||| || || || || || || | | || || ||| | || ||
Sbjct 5847046 GCCTTTACATTTTCTATAGTGTCGGAGGGCTCAACCTGGAGGGTGATGGTCCTCCCCGTA 5846987
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
| || ||||| || ||||||||
Sbjct 5846986 AGGGTTTTTACGAAAATCTGCAT 5846964
>seq322
Length=21489822
Score = 123 bits (136), Expect = 5e-23
Identities = 149/203 (73%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| ||||| || || || | || || |||||||| | | | || ||||| |||||
Sbjct 7411879 TGAAGAGTGGACTCCTTTTTAATGTTGTAATCAGACAAAGTATGTCCATCTTCCAGTTGC 7411938
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||||| || ||||| ||||| ||||| |||||||||||||| || |||||
Sbjct 7411939 TTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 7411998
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| ||||||||||| || || || ||||| || | || ||||| |||||
Sbjct 7411999 GCCTTTACATTTTCTATAGTGTCCAGGGGTTCAGTCTCGTGGATGATGGTCTTCCCTGTA 7412058
Query 82788 AACGTCTTTACAAATATCTGCAT 82810
|| || |||||||| ||| ||||
Sbjct 7412059 AAGGTTTTTACAAAAATCGGCAT 7412081
>seq600
Length=10546185
Score = 104 bits (114), Expect = 5e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| ||||| || || || || || || |||||||| | ||| || |||||||||||
Sbjct 4929184 TGAAGAGTCGACTCCTTTTGAATGTTGTAATCAGACAAAATATGTCCATCTTCTAGTTGC 4929243
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| || | |||||| || |||| ||||| ||| | ||| |||||||||| || |||||
Sbjct 4929244 TTACCTGTAAAGATCAGCTTTTGCTGATCAGGAAGAATTGCTTCCTTATCCTGGATCTTG 4929303
Query 82728 GCTTTTACATTTTCAAT 82744
|| ||||||||||| ||
Sbjct 4929304 GCCTTTACATTTTCTAT 4929320
>seq889
Length=60641186
Score = 100 bits (110), Expect = 6e-16
Identities = 148/208 (71%), Gaps = 5/208 (2%)
Strand=Plus/Minus
Query 82607 GTGCAGAGTAG----ATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTA 82662
|||||| |||| | |||||||| || || || || || ||| | | |||||| || |
Sbjct 60498867 GTGCAGGGTAGTGTGACTCTTTCTGAATGTTGTAGTCTGAGAGAGTCCGACCGTCCTCCA 60498808
Query 82663 GTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAA 82722
| ||||| | ||||| || || | || || || || || |||||||| ||||| |
Sbjct 60498807 GCTGTTTGCTGGCAAATATCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGA 60498748
Query 82723 TCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGC 82782
| || ||||| ||||| ||| | || ||| | || || || || | || || |||||||
Sbjct 60498747 T-TTGGCTTTGACATTCTCACTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGC 60498689
Query 82783 CTGTCAACGTCTTTACAAATATCTGCAT 82810
| | | ||||| || |||||||||||
Sbjct 60498688 CCATTAGGGTCTTCACGAATATCTGCAT 60498661
>seq52
Length=2480672
Score = 100 bits (110), Expect = 6e-16
Identities = 104/135 (77%), Gaps = 1/135 (1%)
Strand=Plus/Minus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG-TCTTCTAGTTG 82666
|| ||||| | || || || || || ||| |||| | | | | || ||||| |||||
Sbjct 411639 TGAAGAGTGAACTCCTTTTGAATGTTGTAACCAGACAAAGTACATCCAATCTTCCAGTTG 411580
Query 82667 TTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTT 82726
|| ||||||||||| || | ||| ||||| ||||| |||||||||||||| || |||||
Sbjct 411579 CTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 411520
Query 82727 TGCTTTTACATTTTC 82741
|| |||||||||||
Sbjct 411519 GGCCTTTACATTTTC 411505
>seq49
Length=2534360
Score = 91.5 bits (100), Expect = 3e-13
Identities = 91/118 (77%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 82632 TTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGT 82691
|| |||||||| | | | | || ||||| | ||| | |||||||||| || |||||
Sbjct 1109962 TTGTAATCAGACAAAGTACATCCATCTTCCACTTGCATAACAGCAAAGATCAGCCTTTGA 1109903
Query 82692 TGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTAT 82749
|||| ||||| |||||||||||||| ||||||| || |||| |||||| || ||||
Sbjct 1109902 TGATTAGGAGGAATTCCTTCCTTATCCTGAATCTCAGCCTTTATATTTTCTATAGTAT 1109845
>seq445
Length=61457488
Score = 84.2 bits (92), Expect = 4e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 60309 AAGCATTTTTCGGAGCTCAGTTGAATTCCTTAATCCATGTTATTATGTATACTTATTATG 60368
|||| ||||| ||||| ||| |||||||||| || ||||| ||||||||| | || ||||
Sbjct 52656630 AAGCGTTTTTTGGAGCCCAGATGAATTCCTTTATTCATGTGATTATGTATTCATACTATG 52656571
Query 60369 GTATGGCGGCGTGTGGACCTATGTTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTA 60428
| | | || | ||| || | || | |||||| | ||||||||||| || || || |
Sbjct 52656570 GATTAACTGCATTTGGCCCGTGGATTCAGAAGTATCTCTGGTGGAAGCGGTACCTGACCA 52656511
Query 60429 T 60429
|
Sbjct 52656510 T 52656510
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981787813081409
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |