Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq578 147 2e-30 seq87 145 7e-30 seq889 102 8e-17 seq789 93.3 4e-14 seq1 86.0 6e-12 >seq578 Length=10717883 Score = 147 bits (162), Expect = 2e-30 Identities = 153/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || | ||| ||| | || || ||||||||||| Sbjct 1250731 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCA-TCTTCCAGCTGCTTGCC 1250673 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| ||||||||| ||||| |||||||| || || |||||| ||| Sbjct 1250672 TGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTT 1250613 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| |||||| |||||||||| || | ||||| ||| ||||| |||||||| Sbjct 1250612 CACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGAGT 1250553 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 1250552 CTTCACGAAGATCTGCAT 1250535 Score = 138 bits (152), Expect = 1e-27 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || ||||| || | ||| ||| | || || ||||||||||| Sbjct 1250959 GTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCA-TCTTCCAGCTGCTTGCC 1250901 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| ||||||||| ||||| |||||||| || || |||||| ||| Sbjct 1250900 TGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTT 1250841 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| |||||| |||||||||| || | ||||| ||| ||||| ||||| || Sbjct 1250840 CACATTCTCAATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAGTGT 1250781 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 1250780 CTTCACGAAGATCTGCAT 1250763 Score = 134 bits (148), Expect = 1e-26 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || | ||| ||| | || || ||||||||||| Sbjct 1250503 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCA-TCTTCCAGCTGCTTGCC 1250445 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| ||||||||| || || |||||||| || || |||||| | ||| Sbjct 1250444 TGCAAAGATGAGCCTCTGCTGGTCAGGTGGAATGCCTTCTTTATCCTGGATCTTGTCCTT 1250385 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| |||||| |||||||||| || | | ||| ||| ||||| ||||| || Sbjct 1250384 CACATTCTCAGTGGTGTCGCTGGGCTCCACCTCCAGGATGATGGTCTTGCCAGTCAGGGT 1250325 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| ||||| || ||||| Sbjct 1250324 TTTCACGAAGATTTGCAT 1250307 >seq87 Length=1495935 Score = 145 bits (160), Expect = 7e-30 Identities = 151/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| ||| | ||| | || || ||||||||||| Sbjct 1203142 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCTTCCAGCTGCTTGCC 1203083 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || |||| ||||||||| || |||||||| |||||||| |||||| ||| Sbjct 1203082 AGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTT 1203023 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| |||||||||| |||| ||||| ||| ||||| || || || Sbjct 1203022 GACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGT 1202963 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 1202962 CTTCACGAAGATCTGCAT 1202945 Score = 141 bits (156), Expect = 9e-29 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| || | ||| | || || ||||||||||| Sbjct 1202914 GGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCTTCCAGCTGCTTGCC 1202855 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || |||| ||||||||| || |||||||| |||||||| |||||| ||| Sbjct 1202854 AGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGATCTTGGCCTT 1202795 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| |||||||||| |||| ||||| ||| ||||| || || || Sbjct 1202794 GACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGT 1202735 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 1202734 CTTCACGAAGATCTGCAT 1202717 >seq889 Length=60641186 Score = 102 bits (112), Expect = 8e-17 Identities = 143/196 (73%), Gaps = 5/196 (3%) Strand=Plus/Minus Query 133467 GACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGC 133525 ||||||||||| || ||||| || | || ||| |||||| ||||| |||| || Sbjct 60498853 GACTCTTTCTGAATGTTGTAGTCTGAGAGAGTCCGACC-GTCCTCCAGCTGTTTGCTGGC 60498795 Query 133526 GTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-TTGA 133584 | || || || |||||||||| ||||||||||||||||| || ||| || |||| Sbjct 60498794 AAATATCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGA--TTTGGCTTTGA 60498737 Query 133585 GCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTT 133644 | |||| ||||| ||||||| || || | ||||| ||| ||||| | || || | Sbjct 60498736 CATTCTCACTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCATTAGGGTCT 60498677 Query 133645 TTACGAAAATCTGCAT 133660 | ||||| |||||||| Sbjct 60498676 TCACGAATATCTGCAT 60498661 >seq789 Length=7921018 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| | || || |||||||| || ||| | | | || || || ||||| || Sbjct 5847160 GTGGACTCCCTTTGAATGTTGTAATCAGACAAAGTGCGTCCA-TCTTCCAGTTGCTTACC 5847102 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 | | || |||| ||||| || ||||| || |||||||| || |||||| ||| Sbjct 5847101 AACAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCTTGGATCTTGGCCTT 5847042 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||||||| |||||| || | || ||||| ||| | || || || || Sbjct 5847041 TACATTTTCTATAGTGTCGGAGGGCTCAACCTGGAGGGTGATGGTCCTCCCCGTAAGGGT 5846982 Query 133643 TTTTACGAAAATCTGCAT 133660 |||||||||||||||||| Sbjct 5846981 TTTTACGAAAATCTGCAT 5846964 >seq1 Length=88624873 Score = 86.0 bits (94), Expect = 6e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 120679 ATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATG 120738 || ||||||||| || || |||||||||| || |||| || |||| | |||| || Sbjct 4804371 ATGAGCTCGTTGGAGAAGGTGAGGCCGGGCAGGAGGCCTCTCTTCTTCAGCCAGAAGATA 4804312 Query 120739 GCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGGCGACCA 120790 || |||||| ||||| |||||||||||||||||| || ||||| |||| Sbjct 4804311 GCCGCAAAGGACCCCGAGAAGAACACGCCCTCCACGGCCGCGAAGGCCACCA 4804260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483401880118440