Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq134 223 4e-53 seq289 147 3e-30 >seq134 Length=33920511 Score = 223 bits (246), Expect = 4e-53 Identities = 658/1006 (65%), Gaps = 19/1006 (2%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| || |||| ||| || |||||||||| || || | ||| ||| Sbjct 27408316 CCAGGGCTTTATGCCGCAGATGCTCATCCAGACACTGGATGGCAAAGAGGTCGACGTCCA 27408257 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || |||||||| || || | ||| || || || ||||| | | ||||| | Sbjct 27408256 TGTCAAACTTGTTGGCAAAAAAGTGGTGT---TTGCGCAGCATCCACGTCAAGTCCCCAG 27408200 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 ||| || | ||||||| || || || || || ||||| ||||| | || || | Sbjct 27408199 CTCCAAAAATGCACACGCTGCGTACATGGACCCCATCACACGGGGGATAGGGCGCGCCCT 27408140 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 || || ||||| || ||| |||||||| |||||||| | | ||||||||||| | Sbjct 27408139 TGTTCAGGTCCCCTTCAAGGTACTGCCACTTGACGAACCTGGCCACGGCCTGCATGTCAG 27408080 Query 162299 AGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 | ||||||||||| |||| || || || | | || | || || | | Sbjct 27408079 ATAGGTCGTACTTGTGGTTCAGGGGCAGGGAGCCTGGGGCCTCAGGGATCCTTTGGATCG 27408020 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||| || | || || || || ||||| || | | |||||||||||||| || || Sbjct 27408019 TGGCCCAGAGATACTCATCAGGGCTGTACGTGTCTTGTGCCCACTCCATGAACTTCCGGA 27407960 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 || || | || | || || || |||| | || | |||||| ||||| | Sbjct 27407959 TGTCTTCATTTTCCAGCACATAGCCCACATACTCCCTGCTGACCACAAAGTAGGCGCTCC 27407900 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGT-TGACTACC 162537 | || || | ||| | | ||||| || |||| ||||||| || | | | Sbjct 27407899 CTGAGAAAAGAGGTGTTTTGAGCGGAGGCTGCGTTTTGGGGGTCCCCGTGTCTGTC-AGC 27407841 Query 162538 ATTCCCTCTACGACCAC---GTGTCTCTTCCTCCACCTGGCCATCTTACTGGTA-GACGG 162593 | || || || || | ||| ||||||| |||| | ||| ||| | | | Sbjct 27407840 TTCCCGTCGACAACTGCATAGTGCCTCTTCC---ACCTTTCTG-CTTTGTGGGATGGCAT 27407785 Query 162594 GTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAG 162653 | || ||||| |||||||| |||| || | ||| |||| | || || || || Sbjct 27407784 CTTCTCCGTCTCCAGACTGTTTTCACCCATGAACGACTTGAGCTTCCTGACAATTTCCAG 27407725 Query 162654 ATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCT 162713 ||||| |||| |||||| || | || || || || || | || ||||| | |||| Sbjct 27407724 GTTGGTTTTAATGGGAAAATCCATCCCACAAAGGTTGATCAGGTACTTCCAGTCCGCGCT 27407665 Query 162714 GAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTA 162773 | || ||| || |||| | |||||||| || ||||| || || |||||||| ||||| Sbjct 27407664 CATTCTGTAGAGGTCCTTCATGCAGTTCAGGTCAGCCTGCACCCGGCTCCACGATGCGTA 27407605 Query 162774 CACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCAT 162833 || |||||||||| | | |||| ||||||||||| |||||| || | || || | Sbjct 27407604 GACCACGCTCTCCAGCTGACTGGCCACAAAGACATTCCTGAAACAGGACGCGATGCCTTT 27407545 Query 162834 CACGGCCAGTGAGAACATCGGGTCC---GCTTTCCTATCTACGTGTACGCAGTATAGATT 162890 ||| || | ||| | |||| | ||| || || || || | ||| || | ||| Sbjct 27407544 CACCGCGGCTATGAA---GGAGTCCTCTGATTTTCTGTCCACATGGATGCAATAGAAATT 27407488 Query 162891 CTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCAC 162950 |||||| || |||||||| || | || || | |||||| || || || || ||||| Sbjct 27407487 CTGAGGCATATAAATGGCCCTTAGAAGCCTGTCAAGCATCTCGATTTTGTGATGGACCAC 27407428 Query 162951 GATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTT 163010 || || ||||| || ||||| | |||||||| || || | | || | ||| || Sbjct 27407427 TATGGAGTACGCAATCGGGAAGCCTGCCTCCTCTTTGCTAAGGGGTTCCGTGATGTATTT 27407368 Query 163011 GCGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056 ||| | | | || | | |||||| |||||||| |||||| Sbjct 27407367 GCGCATCTTGATGAAGGAGGTGCAGTCCCTGGTCATGTTGACGTAG 27407322 >seq289 Length=23972852 Score = 147 bits (162), Expect = 3e-30 Identities = 160/212 (75%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 171530 CCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACTTGACTTTTAGGATCTTTT 171589 |||||||| | ||| | ||| |||||||||| | || || ||||| || | |||||| Sbjct 13837456 CCCAAGTGCAGGACCTGGCAGATCACCTCCT---TCCCAACCTGACTCTTGGCATCTTTG 13837400 Query 171590 ACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATGTAGAACGGTTTTAGTACTA 171649 || || ||||||||||| |||||||| || || ||| |||| | ||| | | ||| || Sbjct 13837399 ACGTGGAGAATGCTAGTGACAGATGTGGTGCCATTAGGATGCAAAACACTCTCAGTGGTA 13837340 Query 171650 TTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCTGGTCTAGCAGTAGCA 171709 || || || || || || ||||| ||||| | || ||||| || || | ||||| ||| Sbjct 13837339 TTCTCAATCCCTGACCCAGCAACCTTCCAGGAGATCACAGGGGCCGGGCGGGCAGTGGCA 13837280 Query 171710 GAGCAAGTTATGTTTAATCCATCTTCGAAGAA 171741 |||||||| ||||||| |||||||||||| Sbjct 13837279 GAGCAAGTGATGTTTAGCTGATCTTCGAAGAA 13837248 Score = 107 bits (118), Expect = 2e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 171926 GGAGGCTGGACGACAACACCGTGATTCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTA 171985 ||||||||||| ||||| || || |||| ||| | |||||||||||||| ||||| || Sbjct 13835542 GGAGGCTGGACCACAACCCCATGTTTCTTACTGTAGGTGGCCATGTTTTCTGGGCTTATA 13835483 Query 171986 GCCTTTATCTTCTGCCACGTTACTATTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTT 172045 |||| | |||||||| || || ||||| ||||| | | ||| | ||| ||||| Sbjct 13835482 TCCTTCTTTTTCTGCCATGTCACAATTAAGGCTTCTAAGGAAGATTGCAAAGAACATCTC 13835423 Query 172046 AAAGAAGCAGGTGTGTTCAATAATTCCCTTTCGTCTTGCGTTACCAC 172092 || || ||||||||||||| | ||||| || || || ||||| Sbjct 13835422 AAGGATGCAGGTGTGTTCAGCGGCTTGCTTTCATCCTGGGTCACCAC 13835376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578409361617600