Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq789 102 2e-16 seq578 98.7 2e-15 seq322 96.9 8e-15 >seq789 Length=7921018 Score = 102 bits (112), Expect = 2e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 206227 TCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGAC 206286 || ||||| | ||| |||||| ||||| ||||| || ||||||||| || || Sbjct 5847021 TCCGACACTATAGAAAATGTAAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCTGAT 5847080 Query 206287 GCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTAC 206346 ||||| || ||||| | || ||||| ||||||||||| | |||||| | |||||| Sbjct 5847081 CAGCAAAGGCTGATCTTTGTTGGTAAGCAACTGGAAGATGGACGCACTTTGTCTGATTAC 5847140 Query 206347 AACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 ||| | || | ||||| ||||| || ||||| |||||||| || Sbjct 5847141 AACATTCAAAGGGAGTCCACTCTCCATCTTGTGTTGAGACTCCG 5847184 >seq578 Length=10717883 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||||||||| ||||| | || Sbjct 1250778 AAGACACTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGCGACACCATTGAGAAT 1250837 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || |||||||| ||| || ||| || || || ||||| Sbjct 1250838 GTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAGCAGAGGCTCATCTTT 1250897 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | || |||||| |||||||||||||| Sbjct 1250898 GCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCT 1250957 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 1250958 ACTCTGCACCTGGT 1250971 Score = 93.3 bits (102), Expect = 1e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| | ||||| || || |||||||| ||| || ||| || || || ||||| Sbjct 1250382 GTGAAGGACAAGATCCAGGATAAAGAAGGCATTCCACCTGACCAGCAGAGGCTCATCTTT 1250441 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | || |||||| ||||||||||||| Sbjct 1250442 GCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCC 1250501 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 1250502 ACTCTGCACCTGGT 1250515 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || |||||||| ||| || ||| || || || ||||| || || ||| Sbjct 1250619 AAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAG 1250678 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | ||| | | || |||||| ||||||||||||| ||||| ||| Sbjct 1250679 CAGCTGGAAGATGGTCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCCACTCTGCAC 1250738 Query 206374 CTTGT 206378 || || Sbjct 1250739 CTGGT 1250743 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| ||||||||||||||||||| || ||||||| | ||| | ||||||||| Sbjct 1250971 ACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCC 1250912 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 |||||||| || || ||||| |||| Sbjct 1250911 AGCTGCTTGCCTGCAAAGATGAGCC 1250887 >seq322 Length=21489822 Score = 96.9 bits (106), Expect = 8e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || || ||||| || ||||| Sbjct 7412006 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGGCTGATCTTT 7411947 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || | ||||| ||||||||||| |||||| | ||||||||| | | || ||||| Sbjct 7411946 GCTGCTAAGCAACTGGAAGATGGACATACTTTGTCTGATTACAACATTAAAAAGGAGTCC 7411887 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| |||||||| || Sbjct 7411886 ACTCTTCATCTTGTGTTGAGACTCCG 7411861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181773390150651