Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq56 174 2e-38 seq289 158 1e-33 seq34 141 1e-28 seq778 129 7e-25 >seq56 Length=43217229 Score = 174 bits (192), Expect = 2e-38 Identities = 135/161 (84%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 ||||| || ||||| || | ||||||||||||||| | ||||||||| ||||||||||| Sbjct 41711005 AGGCCCGTGACGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGC 41710946 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCC 147105 || ||||||||||||||||| || | |||||||||||| || || | ||||||| || Sbjct 41710945 ACGCCCAGGCCCATGTCCCCAGAGCGCTGGTACAGCTGACAGGACAATTCCCCGTTCACC 41710886 Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||||| |||||||| ||| ||||||| || ||||||||||| Sbjct 41710885 ACGTAGAACTGGCAGAGGGTGTGGCAGGGAGGCAGCGCCAT 41710845 >seq289 Length=23972852 Score = 158 bits (174), Expect = 1e-33 Identities = 201/277 (73%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || ||||||| || || || || | || || || || || || || |||||||| || Sbjct 13837218 GTACAGCCCATAGTATTCCTTCACCACAATTTCTTCGAAGATCAGCTAAACATCACTTGC 13837277 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||| |||||||||| | ||| ||| | |||||| || | ||||||| ||||| Sbjct 13837278 TCTGCCACTGCCCGCCCGGCCCCTGTGATCTCCTGGAAGGTTGCTGGGTCAGGGATTGAG 13837337 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 || | | ||| | ||| ||| ||||||| || || ||||| || || | ||||| Sbjct 13837338 AATACCACTGAGAGTGTTTTGCATCCTAATGGCACCACATCTGTCACTAGCATTCTCCAC 13837397 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || ||||| ||||||||||| | || |||||||| |||||||| || |||| ||||| Sbjct 13837398 GTCAAAGATGCCAAGAGTCAGGTTGGGAAGGAGGTGATCTGCCAGGTCCTGCACTTGGGA 13837457 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 |||| || ||| | ||||||| | ||| |||| Sbjct 13837458 GATGTGGCTGACTACAAGGAAACTCTGCACAAAGGTA 13837494 >seq34 Length=50712660 Score = 141 bits (156), Expect = 1e-28 Identities = 130/167 (78%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| ||||||||||||||||| |||||||| | | |||||||| Sbjct 16176345 AGGGTTACCTGGGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTATCTAGTGGAGGTGA 16176404 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| |||| || ||||| | ||| ||||| ||||| ||||||| || Sbjct 16176405 TGCCCAAGGCAGAAAATCA------------TGACCCAGACATCAAGGAACATGTAAGCT 16176452 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||||||||| |||||||| || || ||||||| || ||| Sbjct 16176453 CCCTGGGGGAAAAGCTGAAGACCCTCAGGCTGCGGCTGCGACGCTGT 16176499 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || || || |||||||| |||||||||||||| || || || ||||||| Sbjct 16178455 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 16178514 Query 178522 TAGAAGCTTACATGACAA 178539 ||||||| |||||||||| Sbjct 16178515 TAGAAGCCTACATGACAA 16178532 >seq778 Length=60969063 Score = 129 bits (142), Expect = 7e-25 Identities = 202/288 (70%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||||||||||||||| | |||| | | ||||| |||||||| |||| ||||||| Sbjct 47019372 GTACTCTCTGGTGTTCGTCATTGGTGTGGTGGGCAACACCCTGGTGGTCCTGGTCCTCAC 47019313 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||| | ||| ||||| | | |||||||| ||||| |||| |||||||||| | || Sbjct 47019312 AAAGCAAAAGCGGCTCCGAAACATGACCAGCATCTACCTGCTCAACCTGGCGGTGTCGGA 47019253 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 |||||| | | ||||| || ||||| ||||| |||| | || | |||| | Sbjct 47019252 CCTGCTCTTCCTCTTCACGCTTCCCTTCTGGATCCACTAC--ATCCTGAAGAAC----GC 47019199 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 |||| | | |||| |||||||||| | | ||||| | | |||| ||||| Sbjct 47019198 CTGGGTCTTTGGCCACGCCATGTGTAAGCTCCTGTATGGCCTCCACTATGTGGGCCTGTA 47019139 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGC 8897 ||| || | | || ||||||||| |||| | |||||||| || || Sbjct 47019138 CAGTGAGATTTTCTTCATCATCCTGCTGACCATCGACAGGTACCTGGC 47019091 Score = 123 bits (136), Expect = 3e-23 Identities = 175/245 (71%), Gaps = 12/245 (5%) Strand=Plus/Plus Query 8662 GTCCTCATAAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCC 8721 ||||||| |||||| ||| ||||| |||||||||||||| | |||| ||||| ||||| Sbjct 47076183 GTCCTCACCAAGTACCAGAAGCTCAAAATCATGACCAACATTTACCTGCTCAACTTGGCC 47076242 Query 8722 CTTGGTGACCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT---TCCACTCGGGG 8778 || ||||||||| | | ||||| || ||||| |||| | ||| | |||| Sbjct 47076243 ATTTCTGACCTGCTCTTCCTCTTCACGCTTCCCTTCTGGACTTACTATGTTCACT----- 47076297 Query 8779 GGAACTGGTGGGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAAC 8838 ||||| ||||||| | |||| |||||||||| | || || || | | || Sbjct 47076298 GGAACAAGTGGGTG----TTTGGCCACTTCATGTGTAAGATCATCTCAGGGCTCTACTAC 47076353 Query 8839 GTGGCACTGTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCA 8898 |||| ||| |||||| || | || ||||||||| |||| | ||||||||||| || Sbjct 47076354 GTGGGCTTGTTCAGCGAGATCTTCTTCATCATCCTGCTGACCATTGACAGGTATCTGGCC 47076413 Query 8899 GTTGT 8903 |||| Sbjct 47076414 ATTGT 47076418 Score = 107 bits (118), Expect = 2e-18 Identities = 200/294 (68%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||||||||||||||| | | || | | || || ||||||| || | |||||||| Sbjct 46944858 GTACTCTCTGGTGTTCATCATCGGCGTGGTGGGTAACATCCTGGTGGTCTTGGTCCTCAT 46944799 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||| |||| ||||| | | |||||||| ||||| |||| |||||||||| | || Sbjct 46944798 GAAGTTCAAGCGGCTCCGAAGCATGACCAGCATCTACCTGCTCAACCTGGCAGTGTCGGA 46944739 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 |||||| | | ||||| || ||||| | ||| |||| | | | || || Sbjct 46944738 CCTGCTCTTCCTCTTCACGCTTCCCTTCTTGATCCACTACATCCTGAAGGACAC------ 46944685 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 |||| | | ||| |||||||||| | | || || | | |||||| |||| Sbjct 46944684 CTGGGTCTTTGGCCATGCCATGTGTAAGCTCCTGTCTGGACTCTACTACGTGGGCTTGTA 46944625 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGT 8903 ||| || || | || ||||||||| |||| | || ||||| || ||| |||| Sbjct 46944624 CAGTGAGATCTTCTTCATCATCCTGCTGACCATCGATAGGTACCTGGCAATTGT 46944571 Score = 91.5 bits (100), Expect = 2e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||||| |||| | ||| | ||||||| ||| |||||||| |||||||| Sbjct 46944142 TGGACCTGGCCCTGCAGGTGACAGAGGTAATCGCCTACACGCACTGCTGTGTCAACCCAA 46944083 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCTTCA 9425 ||||||| | |||||||||||| ||||||| || |||| || Sbjct 46944082 TCATCTATGTGTTTGTGGGCGAGAAGTTCCGGAAGTACCTGCA 46944040 Score = 91.5 bits (100), Expect = 2e-13 Identities = 155/221 (70%), Gaps = 9/221 (4%) Strand=Plus/Plus Query 9205 CTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAACGTCCTGCTC 9264 |||||||| |||| ||||| | | |||||| || |||| || |||||| | || ||| Sbjct 47076729 CTCATTTTTGTCATTATGGTGGTCTTTTTTGTGTTCTGGACACCTTACAACCTGCTCCTC 47076788 Query 9265 ATTTTACACACCTACCAAGAGGCCATTTTTGGGCCAGACTGTGAAGCGCGGCGCAG---G 9321 |||| ||| | | || | | || | ||||||| |||| ||| | Sbjct 47076789 CTTTTCTCTGCCTTTGATCTGTCCTTCCT--GGATA-ACTGTGA---GCGGAGCAAACAG 47076842 Query 9322 GTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCC 9381 ||||||||||| ||| | ||| |||||||| ||||||||||||| |||||||| Sbjct 47076843 CTGGACATGGCCAAGCACGTGACAGAGGTGATCGCCCACACCCACTGCTGCATCAACCCC 47076902 Query 9382 GTCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCT 9422 |||||||||| || ||||| || | |||||| || |||| Sbjct 47076903 ATCATCTACGCCTTCGTGGGGGAGAGGTTCCAGAAGTACCT 47076943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583465163738400