Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq578 82.4 6e-11 >seq578 Length=10717883 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 106236 TTTGTCATTTATAAGAGTT--TAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGA 106293 |||||||||| ||| || | ||||||||||| || || ||||| |||||||||||| Sbjct 1250282 TTTGTCATTT-TAATTGTAGGTCAAAATGCAAATCTTCGTGAAAACCCTGACTGGCAAGA 1250340 Query 106294 CCATTACCGTGGAAACAGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCG 106353 |||| | | |||| || ||| |||| | || | ||||| | || || | Sbjct 1250341 CCATCATCCTGGAGGTGGAGCCCAGCGACACCACTGAGAATGTGAAGGACAAGATCCAGG 1250400 Query 106354 ACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAG 106413 | ||||||||| | || ||| || || ||||| || | ||| ||||| || | |||| Sbjct 1250401 ATAAAGAAGGCATTCCACCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAG 1250460 Query 106414 ATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACA 106462 || | ||| | || |||||||| || ||||| || || || || Sbjct 1250461 ATGGTCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCCACTCTGCA 1250509 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || || || || ||| |||||||||||||||| ||| ||||| || ||| || Sbjct 1250763 ATGCAGATCTTCGTGAAGACACTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGC 1250822 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | ||||| || || || ||||||||| | || ||| || Sbjct 1250823 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAG 1250882 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || ||||| || | ||| ||||| || | |||||| | ||| | || |||||| Sbjct 1250883 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAAC 1250942 Query 106440 ATACAAAAAGAATCTACACTACA 106462 || || ||||| ||||| || || Sbjct 1250943 ATCCAGAAAGAGTCTACTCTGCA 1250965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402314247479648