Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq322 158 2e-32 seq223 152 7e-31 seq667 122 1e-21 >seq322 Length=21489822 Score = 158 bits (174), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 |||||||||||||| ||||||||||| || | ||| || |||| ||||| Sbjct 20368423 TACAAGGTGCTCAAACAGGTGCACCCAGACACAGG-----CATT-TCGTCCAAGGCCATG 20368370 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| |||||| ||| Sbjct 20368369 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCAGGCGAGGCATCGCGC 20368310 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| |||| ||||||||||| || ||| | Sbjct 20368309 CTGGCGCACTACAACAAGCGCTCCACCATCACGTCGCGGGAGATCCAGACTGCTGTGAGG 20368250 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| |||||| |||||||||||||||| Sbjct 20368249 CTGTTGCTGCCCGGGGAGCTGGCCAAGCACGCTGTCTCCGAGGGCACCA 20368201 Score = 98.7 bits (108), Expect = 1e-14 Identities = 167/237 (70%), Gaps = 14/237 (6%) Strand=Plus/Plus Query 724910 TATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTC 724969 ||||||||||||||| |||||||| || || || || |||| ||| ||| | Sbjct 19938426 TATCTACAAGGTGCTAAAGCAGGTTCATCCAGACAC-----GGGCATC-TCCTCAAAGGC 19938479 Query 724970 CATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGC--ATCGGCACCGAGGCC 725027 ||| ||| |||| || |||||| ||||| | || || |||| |||||| Sbjct 19938480 TATGAGCATCTTGAATTCCTTTGTCTCTGACATATTTGAACGTGTATCGTG--CGAGGCA 19938537 Query 725028 GGTCGCCTGGCGCGCTCCAACAAGCG--CAACACGATCGGCACGCGCGAGATCCAGACCG 725085 |||||||| | || ||||||||| |||| || |||| | |||||||||| | Sbjct 19938538 TCACGCCTGGCACACTACAACAAGCGTTCAACCATTTCATCACGGG--AGATCCAGACGG 19938595 Query 725086 CCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||||| ||| | ||| ||| || ||||||| |||||| || |||||||| |||| Sbjct 19938596 CTGTGCGGCTGCTGCTGCCCGGAGAGCTGGCCAAGCACGCTGTGTCCGAGGGTACCA 19938652 >seq223 Length=78341846 Score = 152 bits (168), Expect = 7e-31 Identities = 172/229 (75%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| ||||| |||| |||| || |||| ||||| Sbjct 10911053 TACAAGGTGCTGAAGCAGGTCCACCCGGACACCGG-----CATC-TCGTCCAAGGCCATG 10911000 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| |||||| ||| Sbjct 10910999 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCTGGCGAGGCGTCGCGC 10910940 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| || ||| | || ||||||||||| ||||||||| Sbjct 10910939 CTGGCACACTACAACAAGCGCTCAACCATCACGTCCCGTGAGATCCAGACGGCCGTGCGC 10910880 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||||| ||||||| ||| ||||| || |||||||||| Sbjct 10910879 CTGCTGCTGCCAGGCGAGCTGGCCAAGCATGCCGTGTCAGAGGGCACCA 10910831 Score = 129 bits (142), Expect = 8e-24 Identities = 139/183 (76%), Gaps = 6/183 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 10942070 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 10942017 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||| ||||| |||| ||||||| |||||| |||| Sbjct 10942016 GGCATCATGAACTCCTTCGTCAATGACATCTTCGAGCGCATCGCTGGCGAGGCGTCTCGC 10941957 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||||||| || ||| | |||||||||||||| ||||||||| Sbjct 10941956 CTGGCACACTACAACAAGCGCTCGACCATCACGTCCCGCGAGATCCAGACGGCCGTGCGC 10941897 Query 725094 CTG 725096 ||| Sbjct 10941896 CTG 10941894 >seq667 Length=61152626 Score = 122 bits (134), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 7/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || | | | ||| ||| ||||| Sbjct 599574 TACAAGGTGCTGAAGCAGGTGCACCCCGACACAGGCATGTCTTCC------AAGGCCATG 599521 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| | ||||||||||| |||| | ||||| || |||||| ||| Sbjct 599520 GGCATCATGAACTCCATCGTCAACGACATCTTCGAGCACATCGCCATCGAGGCGTCGCGC 599461 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || || ||||||| || |||| || | ||| | | || ||||||| | Sbjct 599460 CTGGCGCACTACAGCAAGCGCTTGACCATCGTGTCGGGAGAGGTGCCCACGGCCGTGCAC 599401 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || || |||| ||||||||| || | |||| ||| Sbjct 599400 CTGCTGCTGCCCGGGGAGCT-GCCAAGCACGCCGTGTCTGCGGGCCCCA 599353 Score = 93.3 bits (102), Expect = 6e-13 Identities = 130/183 (71%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || | | | ||| ||| | ||| Sbjct 587294 TACAAGGTGCTGAAGCAGGTGCACCCCGACACAGGCATGTCTTCC------AAGGCAATG 587347 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||| ||||| | || ||||||| || |||||| ||| Sbjct 587348 GGCATCATGAACTCCTTCGTCAATGACATCTTTGAGCGCATCGCCATCGAGGCGTCCCGC 587407 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 |||| || || |||||||||| || ||| || | ||| | | || ||||||||| Sbjct 587408 CTGGTGCACTACAACAAGCGCTTGACCATCCTGTCGGGAGAGGTGCCCACGGCCGTGCGC 587467 Query 725094 CTG 725096 ||| Sbjct 587468 CTG 587470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177509209295222