Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq29 105 5e-18 >seq29 Length=3441549 Score = 105 bits (116), Expect = 5e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||||||| | |||| || || ||||| || || || || || ||||| ||||| Sbjct 3376477 CAAGAAGTTCAAATCACAGAGGCTCGCTGTTTCTACGGCTTCCAGATCGCCATGGAAAAC 3376418 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 |||||||| |||||||||||||| || || ||||| || ||||||||| Sbjct 3376417 ATTCATTCCGAAATGTACAGTCTCCTCATCGATACTTATATCAAAGAT 3376370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397440833451655