Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq29 84.2 3e-11 >seq29 Length=3441549 Score = 84.2 bits (92), Expect = 3e-11 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 |||| || | | |||||||||||| || ||| || || |||||||| ||||| |||| Sbjct 3375146 CCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCT 3375205 Query 130095 TCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 ||| |||||| |||| | ||||| || ||||| || ||||| || ||||| Sbjct 3375206 TCAGCCAGAAGATCGACGCAAAA-GAACCAGAAAAAAAGATGCCTTCCAC 3375254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618410995992360