Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq29 95.1 1e-14 seq1 91.5 2e-13 >seq29 Length=3441549 Score = 95.1 bits (104), Expect = 1e-14 Identities = 101/131 (77%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||| | ||||| ||||| ||||| || |||||| Sbjct 3375148 TCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCTTC 3375207 Query 74832 AACCAAAAGAT-GGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890 | ||| ||||| | | || || |||||| || ||||||||||| || |||||||| Sbjct 3375208 AGCCAGAAGATCGACGCA-AAAGAACCAGAAAAAAAGATGCCTTCCACGGCAGCAAAGGC 3375266 Query 74891 GACAAGGCGTT 74901 || | ||||| Sbjct 3375267 TACCACGCGTT 3375277 >seq1 Length=88624873 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| ||||||||| ||| || || || || || Sbjct 70987481 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 70987422 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | || || ||||||||||| |||||||| || ||| Sbjct 70987421 CCAATGGGCTGAAGCAAGTTAATATTATTACTTCCCACAAAGTTCTGAGCCAAATTCACA 70987362 Query 117425 ATCGT 117429 || || Sbjct 70987361 ATAGT 70987357 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 70987481 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 70987422 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || | ||| | || || ||||| || |||||||||||||||||| Sbjct 70987421 CCAATGGGCTGAAGCAAGTTAATATTATTACTTCCCACAAAGTTCTGAGCCAAATTCACA 70987362 Query 152149 ATCGT 152153 || || Sbjct 70987361 ATAGT 70987357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547194583333800