Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq87 150 2e-31 seq578 132 5e-26 seq789 122 1e-22 seq322 113 5e-20 seq52 104 3e-17 seq889 100 3e-16 seq1 82.4 9e-11 >seq87 Length=1495935 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || || |||||||| || || || ||||| ||| | | Sbjct 1202716 AATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAG 1202775 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||||| ||| | ||||| || || || ||||||||||| || || || ||||| Sbjct 1202776 TGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCA 1202835 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || || ||||| ||||| || || |||| || ||||| | ||||| || Sbjct 1202836 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAA 1202895 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || |||| || | ||||| Sbjct 1202896 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGAGGTGG 1202943 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || || ||||| ||| | || Sbjct 1202945 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 1203004 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || || || ||||||||||| || || || |||||| Sbjct 1203005 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 1203064 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||| ||||| || || |||| || ||||| | ||||| || Sbjct 1203065 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCCGACTACAAC 1203124 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || ||| |||| || Sbjct 1203125 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCT 1203162 >seq578 Length=10717883 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| || || || || || |||||||| || | || ||||| ||| | | Sbjct 1250306 AATGCAAATCTTCGTGAAAACCCTGACTGGCAAGACCATCATCCTGGAGGTGGAGCCCAG 1250365 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || || ||| |||||| || || ||||| || || || ||||| || ||||| Sbjct 1250366 CGACACCACTGAGAATGTGAAGGACAAGATCCAGGATAAAGAAGGCATTCCACCTGACCA 1250425 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || ||||| || ||||| || || |||| ||| || || | ||||| || Sbjct 1250426 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAA 1250485 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || |||||||| || || || |||| || | ||||| Sbjct 1250486 CATCCAGAAAGAGTCCACTCTGCACCTGGTGCTGCGCCTGAGAGGTGG 1250533 >seq789 Length=7921018 Score = 122 bits (134), Expect = 1e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || ||||| || | ||| || || || |||||||| | Sbjct 5846964 ATGCAGATTTTCGTAAAAACCCTTACGGGGAGGACCATCACCCTCCAGGTTGAGCCCTCC 5847023 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| || || || || ||||| ||||||||||| || ||| Sbjct 5847024 GACACTATAGAAAATGTAAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCTGATCAG 5847083 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || |||| |||||||||||| || |||| || || | | || || || Sbjct 5847084 CAAAGGCTGATCTTTGTTGGTAAGCAACTGGAAGATGGACGCACTTTGTCTGATTACAAC 5847143 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||| ||| |||||||| ||||| || ||| | || || ||||| Sbjct 5847144 ATTCAAAGGGAGTCCACTCTCCATCTTGTGTTGAGACTCCGTGGTGG 5847190 >seq322 Length=21489822 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||| || ||||| || || |||| || ||||| || | | ||| ||| | Sbjct 7412081 ATGCCGATTTTTGTAAAAACCTTTACAGGGAAGACCATCATCCACGAGACTGAACCCCTG 7412022 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| || || ||||| ||||| ||||||||||| || ||| Sbjct 7412021 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 7411962 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || ||||||| ||||||||| || |||| | ||| | | || || || Sbjct 7411961 CAAAGGCTGATCTTTGCTGCTAAGCAACTGGAAGATGGACATACTTTGTCTGATTACAAC 7411902 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||||| |||||||||||||| || ||| | || || ||||| Sbjct 7411901 ATTAAAAAGGAGTCCACTCTTCATCTTGTGTTGAGACTCCGTGGTGG 7411855 >seq52 Length=2480672 Score = 104 bits (114), Expect = 3e-17 Identities = 119/158 (75%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 27477 AAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAAT 27536 |||| | ||||| || || ||||| ||||| ||||||||||| || ||||| | || || Sbjct 411507 AAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAGGGCTGAT 411566 Query 27537 TTTTGCTGGTAAGCAACTCGAGGAT--GATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 ||||||||||||||||| || ||| ||| |||| | | | || || | |||||| Sbjct 411567 CTTTGCTGGTAAGCAACTGGAAGATTGGAT-GTACTTTGTCTGGTTACAACATTCAAAAG 411625 Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | |||||||||||| || ||| | || | ||||| Sbjct 411626 GAGTTCACTCTTCATCTTGTGTTGAGACTCCATGGTGG 411663 >seq889 Length=60641186 Score = 100 bits (110), Expect = 3e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || | |||||||| || || |||||||||||| | || Sbjct 60498661 ATGCAGATATTCGTGAAGACCCTAATGGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 60498720 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || || ||| | || || |||| || |||||||| || || || || |||||| Sbjct 60498721 GACACCAGTGAGAATGTCAAAGC-CAAATCCAAGACAAGGAAGGCATCCCACCCGACCAG 60498779 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 | || || || ||||| | || || || ||||| | ||| || || ||||||| || Sbjct 60498780 CGGCTCCTGATATTTGCCAGCAAACAGCTGGAGGACGGTCGGACTCTCTCAGACTACAAC 60498839 Query 27586 GTCCAAAAGGAATC-CACT 27603 | || || || || |||| Sbjct 60498840 ATTCAGAAAGAGTCACACT 60498858 >seq1 Length=88624873 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 || ||||| || | |||||||||||||| || ||||| | ||||| || |||| Sbjct 70987357 ACTATTGTGAATTTGGCTCAGAACTTTGTGGGAAGTAATAATATTAACTTGCTTCAGCCC 70987416 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| || ||||| |||||||| |||||||| ||| | ||||| || Sbjct 70987417 ATTGGTCAGTTTGGAACTCGGCTTCATGGTGGCAAAGATGCTGCAAGCCCTCGTTATATT 70987476 Query 32245 TTCAC 32249 ||||| Sbjct 70987477 TTCAC 70987481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570288079476720