Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq445 96.9 4e-15 >seq445 Length=61457488 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 32670 GCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAGATACTATTTTCTTCATA 32729 |||||||||| || || | |||||||| | || ||| | || || | || || || Sbjct 52658061 GCCTTGTGGTGGTACTTCGTATCTAAAGGAGTGGAGTATTTGGACACAGTATTTTTTATC 52658002 Query 32730 ATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACCACCATTTTACCATGTTT 32789 |||| |||||| ||||||||| || |||||||| || || || | ||||||||| Sbjct 52658001 CTGAGGAAGAAAAACAACCAAGTTTCTTTCTTGCACGTGTATCATCACTGTACCATGTTC 52657942 Query 32790 ACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACA 32830 || | | ||||| || ||||| ||| ||||||||||||| Sbjct 52657941 ACACTGTGGTGGATTGGAATTAAGTGGGTTGCAGGAGGACA 52657901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603157193011440