Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq134 172 7e-38 seq3 140 4e-28 >seq134 Length=33920511 Score = 172 bits (190), Expect = 7e-38 Identities = 606/936 (65%), Gaps = 29/936 (3%) Strand=Plus/Plus Query 13671 CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAG 13730 ||||| ||| || |||| | || || || || ||||| || ||| |||| ||||| Sbjct 27407383 CCCCTTAGCAAAGAGGAGGCAGGCTTCCCGATTGCGTACTCCATAGTGGTCCATCACAAA 27407442 Query 13731 ATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTC 13790 ||||||||| | || | || || |||||||| || || ||||| |||| ||| || Sbjct 27407443 ATCGAGATGCTTGACAGGCTTCTAAGGGCCATTTATATGCCTCAGAATTTCTATTGCATC 27407502 Query 13791 CACGTGGACTCCAAGTCCGGCGACGAGTTCAT--CCGGGGCGTCTCGGCCATCGCCAGGT 13848 || |||||| || || | ||| ||||| ||| || | | |||||| | Sbjct 27407503 CATGTGGACAGAAAATCAGAGGACTCCTTCATAGCCGCGGTGAAAGG--CATCGCGTCCT 27407560 Query 13849 GCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTC 13908 | ||| || || ||||| | |||| | |||||| |||| || ||||| | Sbjct 27407561 GTTTCAGGAATGTCTTTGTGGCCAGTCAGCTGGAGAGCGTGGTCTACGCATCGTGGAGCC 27407620 Query 13909 GCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGT 13968 | |||||||| ||||| | ||||||| |||||| || || | |||| || Sbjct 27407621 GGGTGCAGGCTGACCTGAACTGCATGAAGGACCTCTACAGAATGAGCGCGGACTGGAAGT 27407680 Query 13969 ACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGG 14028 ||||| ||||||| || |||||||| || || | || ||||||||||| || || || Sbjct 27407681 ACCTGATCAACCTTTGTGGGATGGATTTTCCCATTAAAACCAACCTGGAAATTGTCAGGA 27407740 Query 14029 CGCTGAAGGC---CCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCACA 14085 ||| ||| | | |||| | | ||| ||||||| ||| ||||| ||||| Sbjct 27407741 AGCTCAAGTCGTTCATGGGTG---AAAACAGTCTGGAGACGGAGAAGATGCCATCCCACA 27407797 Query 14086 A-GCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACC 14144 | || | | | ||||||||||| | | || ||| | || |||| Sbjct 27407798 AAGCAGAAAGGT----GGAAGAGGCACTATGCAGTTGTCGACGGGAAGCTGACAGACACG 27407853 Query 14145 GGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTT 14204 || | ||| | | ||| ||||||| | || | || | || | ||| |||||| Sbjct 27407854 GGGACCCCCAAAACGCAGCCTCCGCTCAAAACACCTCTTTTCTCAGGGAGCGCCTACTTT 27407913 Query 14205 GCGGTCACCCGGGAGTTCGTGGACTTCGTCCTC---AAGGACGAG--CCGGTGGCCCTGC 14259 | ||||| | |||||| |||| || || || || || || |||| | Sbjct 27407914 GTGGTCAGCAGGGAGTATGTGGGCTATGTGCTGGAAAATGAAGACATCCGGAAGT----- 27407968 Query 14260 TCATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGA 14319 ||||| | ||| | |||||||||||||| || ||| | || |||||||| | || | Sbjct 27407969 TCATGGAGTGGGCACAAGACACGTACAGCCCTGATGAGTATCTCTGGGCCACGATCCAAA 27408028 Query 14320 GAATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGT 14379 | || | | | || || | ||| | || |||||||||| || |||||| Sbjct 27408029 GGATCCCTGAGGCCCCAGGCTCCCTGCCCCTGAACCACAAGTACGACCTATCTGACATGC 27408088 Query 14380 GGGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCC 14439 |||| || |||||||||||||||||| ||| || ||||| | || || || || | Sbjct 27408089 AGGCCGTGGCCAGGTTCGTCAAGTGGCAGTACCTTGAAGGGGACCTGAACAAGGGCGCGC 27408148 Query 14440 TGTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACG 14499 || || || || || || |||| || | | | | ||||| || || | || ||| Sbjct 27408149 CCTATCCCCCGTGTGATGGGGTCCATGTACGCAGCGTGTGCATTTTTGGAGCTGGGGACT 27408208 Query 14500 TGAAGTGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACG--GA 14557 ||| |||| || | || | ||| | || ||||||||||| ||| | | |||| || Sbjct 27408209 TGACGTGGATGCTGCGCAAACACCACTTTTTTGCCAACAAGTTTGAC-ATG-GACGTCGA 27408266 Query 14558 CGAGTTCGCCGTGCGCTGTCTGGACGAGGACGTGCG 14593 | || ||| | | |||||||| ||| | |||| Sbjct 27408267 CCTCTTTGCCATCCAGTGTCTGGATGAGCATCTGCG 27408302 >seq3 Length=4952767 Score = 140 bits (154), Expect = 4e-28 Identities = 570/887 (64%), Gaps = 30/887 (3%) Strand=Plus/Plus Query 13672 CCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGA 13731 |||||||| || ||| || || |||||||| ||||| || ||| | ||| | || | Sbjct 2813166 CCCTGAGCAAAGAGGAGTCAGACTTCCCCATCGCGTACTCTATGGTGGTTCACGAGAAAA 2813225 Query 13732 TCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCC 13791 |||||| || ||| | || ||| | || | ||| |||||||| | ||||| ||| Sbjct 2813226 TCGAGAACTTTGAGAGGCTGCTGCGAGCTGTGTACATGCCGCAGAATGTGTACTGTATCC 2813285 Query 13792 ACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCT 13851 |||||||| || || || |||| || ||| ||||||||| |||| Sbjct 2813286 ACGTGGACAAGAAATCTCCAGAAATGTTCCAAGAGGCAGTCAGGGCCATCGCTTCCTGCT 2813345 Query 13852 TCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCG 13911 |||| ||||| | | ||| | |||| |||||| |||| ||||||| | | Sbjct 2813346 TCCCAAACGTCTTCATAGCCAGCAAGCTGGTTCCCGTGGTTTACGCCTCCTGGTCCAGGG 2813405 Query 13912 TGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACC 13971 ||||||| ||||| | ||||||| |||| || | || || ||||| ||| Sbjct 2813406 TGCAGGCTGACCTGAACTGCATGGAGGACTTGCTCCGGAGTCCAGTGCGGTGGACCTACT 2813465 Query 13972 TGCTCA--ACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGC 14029 |||| | |||||| |||| ||||| || | ||||||||| ||||| || ||||| Sbjct 2813466 TGCTGAATACCTGT--GGGACAGACTTTCCCATAAAGACCAACGCTGAGATGGTCCGGGC 2813523 Query 14030 GCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCA---ACCACAA 14086 |||| | || ||| |||||| | ||||| || || |||| | |||| Sbjct 2813524 CCTGAGGATGTTGAACGGGAAGAACAGCATGGAGTCAGA---AATCCCCAGCGAGTACAA 2813580 Query 14087 GCTGCACCGCATCAGGAAGAGGC---ACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACAC 14143 ||| || |||| | |||||||| || | | | || || || Sbjct 2813581 -AAAAACCCGAT--GGAAATATCACTACGTGGTG--AAG----GACAAGTTGTACATAAC 2813631 Query 14144 CGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTT 14203 | ||| ||| |||| || || || || | |||| || | || || || ||| | Sbjct 2813632 CAGCAAGAAGAAGGAGCCTCCCCCTTACAACGTAACCATGTTCACCGGCAATGCCTACAT 2813691 Query 14204 TGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCC---CTGCT 14260 || || | ||||| ||||| | |||||| || || || || | ||| Sbjct 2813692 TGTGGCTTCTCGGGACTTCGTCCATCACGTCCTAAATAAC---CCTAAATCCCAGCAGCT 2813748 Query 14261 CATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAG 14320 || | ||| | | ||||| ||||| || ||||| || || ||||||||| | ||| | Sbjct 2813749 GATCGAATGGGTGAAAGACACCTACAGTCCTGACGAACATCTCTGGGCCACCCTCCAGCG 2813808 Query 14321 AATGTACGGGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTG 14380 | ||| |||||| ||| | || | |||||| |||| |||||||||| Sbjct 2813809 GGCCCCCTGGATGCCCGGCTCTTCGCCCTTGCATGCCAAGTATGACATCTCGGACATGAC 2813868 Query 14381 GGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCT 14440 |||| | |||| | ||||||||||| | | ||||| || |||| | ||||| | Sbjct 2813869 CGCCATTGCCAGGCTGGTCAAGTGGCAGCAACATGAGGGTGACATCAGCCAGGGGGCACC 2813928 Query 14441 GTACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGT 14500 || |||||| || ||||| | ||||||||||| | ||| |||| ||| | Sbjct 2813929 TTATGGACCTTGCTCTGGGGTCCACCGGCGGGCCATCTGCATTTATGGGGCCGGGGACCT 2813988 Query 14501 GAAGTGGCTGAAG-AGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 | | ||| || | || || | || ||||| ||||||||||| ||| Sbjct 2813989 GCACTGGATGCTGCAGAATCAC-CATCTGTTGGCCAACAAGTTTGAC 2814034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658713418594560