Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq56 163 3e-35 >seq56 Length=43217229 Score = 163 bits (180), Expect = 3e-35 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| |||||||||||||| || || ||||||||||||||||| |||||||| | ||| Sbjct 41710833 GATCTTCCTCTGATGGCGCTGCCTCCCTGCCACACCCTCTGCCAGTTCTACGTGGTGAAC 41710892 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 ||||| ||||||| ||||| || || || || || |||||||| | || ||||| ||| Sbjct 41710893 GGGGAATTGTCCTGTCAGCTGTACCAGCGCTCTGGGGACATGGGCCTGGGCGTGCCCTTC 41710952 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 ||||| || || ||||| |||||||| |||||||| || || ||| Sbjct 41710953 AACATCGCCAGCTACGCCCTGCTCACCTACATGATTGCGCACGTC 41710997 Score = 163 bits (180), Expect = 3e-35 Identities = 135/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 ||| || || |||||||| |||||||| ||||| || || |||||||| ||||| || | Sbjct 41710997 GACGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCGATGTTGAAGGGCACGCCCAG 41710938 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 |||||||| || || || || || ||||| ||||||| ||||| ||| | |||||||| Sbjct 41710937 GCCCATGTCCCCAGAGCGCTGGTACAGCTGACAGGACAATTCCCCGTTCACCACGTAGAA 41710878 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||||||||||||| || || |||||||||||||| ||||| Sbjct 41710877 CTGGCAGAGGGTGTGGCAGGGAGGCAGCGCCATCAGAGGAAGATC 41710833 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| || || || ||| ||| ||||| || ||||| || | |||||||||||||| | Sbjct 41707613 CCAAAGAACTGTCATCCAAGGGCGTGAAAATTTGGGATGCCAATGGGTCTCGAGACTTCC 41707672 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||||| | |||||| | || |||| || ||| ||||||| | || || |||| Sbjct 41707673 TGGACAGCCTGGGGTTTTCTAGCCGCCAGGAAGGGGACCTGGGCCCCATTTATGGCTTCC 41707732 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| || |||||||| || || Sbjct 41707733 AGTGGAGGCATTTTGGGGCTGAATA 41707757 Score = 95.1 bits (104), Expect = 1e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||||||||| || || | ||||||| ||| || |||| Sbjct 41707757 TATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAATGGGGCCCAGGTCCCCTTCCTGG 41707698 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || | |||||| | ||||||| |||||||||||||| | || ||||| || ||| Sbjct 41707697 CGGCTAGAAAACCCCAGGCTGTCCAGGAAGTCTCGAGACCCATTGGCATCCCAAATTTTC 41707638 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || ||| ||| || || || |||| Sbjct 41707637 ACGCCCTTGGATGACAGTTCTTTGG 41707613 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGG 34519 || || || || || || |||| |||||||||||| | ||||| |||||| | || Sbjct 41709449 GCAGATTACTCAGGTCAAGGAGTTGACCAGCTGCAGAAAGTGATTGACACCATCAAAACC 41709508 Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 ||||||||||||||||| || | ||||| || ||||||||||| Sbjct 41709509 AACCCTGATGACAGAAGAATTATCATGTGTGCCTGGAACCCGAA 41709552 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 6782 TTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCG 6841 ||||||||||| || ||||| | || ||||||||||||||||| || | |||||| Sbjct 41709552 TTCGGGTTCCAGGCACACATGATAATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCA 41709493 Query 6842 ATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGC 6885 ||||| | |||||||||||| |||| || || || || || || Sbjct 41709492 ATCACTTTCTGCAGCTGGTCAACTCCTTGACCTGAGTAATCTGC 41709449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448244856130320