Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq578 176 1e-38 seq87 167 5e-36 seq789 163 7e-35 seq322 145 2e-29 seq52 145 2e-29 seq600 116 9e-21 seq89 116 9e-21 seq889 109 1e-18 seq700 84.2 5e-11 >seq578 Length=10717883 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| |||||||||||||| |||||||| || || | ||| || | |||||| Sbjct 1250746 AGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCT 1250687 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || ||||||||||||| ||||| || ||| Sbjct 1250686 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 1250627 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || |||||||| | || ||||| || ||||| ||| Sbjct 1250626 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 1250567 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || |||||||| || || | |||||| Sbjct 1250566 TTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1250535 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||| |||||||| |||||||| || || | ||| || | |||||| Sbjct 1250974 AGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCT 1250915 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || ||||||||||||| ||||| || ||| Sbjct 1250914 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 1250855 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || || |||||||| | || || || || ||||| ||| Sbjct 1250854 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACTTCCAGGGTGATGGTC 1250795 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 1250794 TTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 1250763 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| |||||||||||||| |||||||| || || | ||| || | |||||| Sbjct 1250518 AGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCT 1250459 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||||||||| ||||| || | || |||||||| |||| ||||| || ||| Sbjct 1250458 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGAATGCCTTCTTTATCC 1250399 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| | ||||| || || ||||||| | || ||||| || |||| ||| Sbjct 1250398 TGGATCTTGTCCTTCACATTCTCAGTGGTGTCGCTGGGCTCCACCTCCAGGATGATGGTC 1250339 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || || || || || | |||||||| Sbjct 1250338 TTGCCAGTCAGGGTTTTCACGAAGATTTGCATTTT 1250304 >seq87 Length=1495935 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 1203156 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCT 1203097 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || | || |||||||| || | || |||||||| Sbjct 1203096 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 1203037 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | || |||||||| ||||| ||| Sbjct 1203036 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTC 1202977 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 1202976 TTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 1202945 Score = 163 bits (180), Expect = 7e-35 Identities = 164/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 1202928 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCT 1202869 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || | || |||||||| || | || |||||||| Sbjct 1202868 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 1202809 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || ||||||||| | || |||||||| ||||| ||| Sbjct 1202808 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTC 1202749 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || ||||| ||||| || || | ||||||| Sbjct 1202748 TTGCCAGTGAGGGTCTTCACGAAGATCTGCATT 1202716 >seq789 Length=7921018 Score = 163 bits (180), Expect = 7e-35 Identities = 171/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| ||||| | ||||| || ||||||||||| |||| ||||| ||||| | | || Sbjct 5847185 ACGGAGTCTCAACACAAGATGGAGAGTGGACTCCCTTTGAATGTTGTAATCAGACAAAGT 5847126 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||||| ||||| || | ||||| || | ||| || |||||||||| ||| Sbjct 5847125 GCGTCCATCTTCCAGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGGAATTCC 5847066 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| || |||||||| || || ||||| || ||||| ||| ||||||| ||| Sbjct 5847065 TTCCTTATCTTGGATCTTGGCCTTTACATTTTCTATAGTGTCGGAGGGCTCAACCTGGAG 5847006 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 ||||| ||| | ||||| || || ||||| || | |||||| || Sbjct 5847005 GGTGATGGTCCTCCCCGTAAGGGTTTTTACGAAAATCTGCATCTT 5846961 >seq322 Length=21489822 Score = 145 bits (160), Expect = 2e-29 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| ||||| | ||||| |||||||||||||| |||| ||||| ||||| | | || Sbjct 7411860 ACGGAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTTAATGTTGTAATCAGACAAAGT 7411919 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 |||||||||||| ||||| | || ||||| || | ||| || |||||||||| ||| Sbjct 7411920 ATGTCCATCTTCCAGTTGCTTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCC 7411979 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| ||||||||||| || || ||||| || ||||| | |||| |||| | Sbjct 7411980 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCAGGGGTTCAGTCTCGTG 7412039 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||| ||||| || || | || |||||||| | | |||| || Sbjct 7412040 GATGATGGTCTTCCCTGTAAAGGTTTTTACAAAAATCGGCATCTT 7412084 >seq52 Length=2480672 Score = 145 bits (160), Expect = 2e-29 Identities = 167/222 (75%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 210897 AGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTT 210956 ||||| | ||||| ||||||||| |||| ||||| ||||| ||| | | | || | | Sbjct 411654 AGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAACCAGACAAAGTACAT 411595 Query 210957 CCA-TCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||| |||||||| ||||| || || ||||| || | ||| || |||||||||| |||||| Sbjct 411594 CCAATCTTCCAGTTGCTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTC 411535 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||| ||||||||||| || || ||||| | ||||| ||| |||||||||||| || Sbjct 411534 CTTATCCTGGATCTTGGCCTTTACATTTTCTACAGTGTCCGAGGGTTCAACCTCGAG-GT 411476 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 | | ||||| ||| | | || |||| || | ||| || || Sbjct 411475 GGTGGTCTTCCCCATAACGGTTTTTATGAAAATCTGTATCTT 411434 >seq600 Length=10546185 Score = 116 bits (128), Expect = 9e-21 Identities = 123/162 (76%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 ||| |||||||| ||||| |||||||| ||||| ||||| ||||| ||||| | | | Sbjct 4929165 ACGGAGTCTTAGCACAAGATGAAGAGTCGACTCCTTTTGAATGTTGTAATCAGACAAAAT 4929224 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 ||||||||| || ||||| |||| ||||| || ||| || |||||| ||| | | Sbjct 4929225 ATGTCCATCTTCTAGTTGCTTACCTGTAAAGATCAGCTTTTGCTGATCAGGAAGAATTGC 4929284 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC 211054 |||||| ||||||||||| || || ||||| |||| ||| Sbjct 4929285 TTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATGGCGTC 4929326 >seq89 Length=40145203 Score = 116 bits (128), Expect = 9e-21 Identities = 156/214 (73%), Gaps = 11/214 (5%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || |||||||||||||||||||| || || | || |||| ||||| Sbjct 36668706 AGTACCAGGTGTAGGGTGGACTCTTTTTGGATGTTGTAGTCTGAGAGAGTCCAACCATCC 36668765 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| |||| ||||| || |||| || || ||||| || | | |||||||| Sbjct 36668766 TCCAGCTGTTTGCTGGCGAATATCAGGCACTGCTGTTCAGGTGGGATGCTCTCCTTGTCT 36668825 Query 211023 TGGATCTTTTGTTTCACGTTTTCGA--TGGTGTCAGAGCTTTCAACCTCGAGAGTGATCG 211080 |||| ||||| ||||| || |||||||| | || |||||||| || | Sbjct 36668826 TGGA--TTTTG------GTTTT-GACTTGGTGTCACTGGGCTCGACCTCGAGGATGGTGT 36668876 Query 211081 TCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| ||||| || ||||| || || | |||||| Sbjct 36668877 TCTTACCCGTCAGGGTCTTCACGAAGATCTGCAT 36668910 >seq889 Length=60641186 Score = 109 bits (120), Expect = 1e-18 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 210917 AGTG-GACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGC 210975 |||| |||||||| || ||||| || || | || |||| || || |||||||| |||| Sbjct 60498858 AGTGTGACTCTTTCTGAATGTTGTAGTCTGAGAGAGTCCGACCGTCCTCCAGCTGTTTGC 60498799 Query 210976 CTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTT 211035 || || || ||| | | ||||| || || | ||||||||||| ||||| || || Sbjct 60498798 TGGCAAATATCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGAT-TTGGCTT 60498740 Query 211036 TCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAG 211095 | || || || |||||||| | |||||||| || ||||| ||||| ||| | || | Sbjct 60498739 TGACATTCTCACTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCATTAGGG 60498680 Query 211096 TCTTTACAAACACCTGCAT 211114 |||| || || | |||||| Sbjct 60498679 TCTTCACGAATATCTGCAT 60498661 >seq700 Length=8709706 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||||||||| ||||| || ||| || || ||||||||||| | |||||||| Sbjct 8134117 CCTTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCGCTGGGCTCAACCTCA 8134058 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTT 211116 || ||||| ||||| ||||| || ||||| || || | |||||||| Sbjct 8134057 AGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAATATCTGCATTT 8134012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159105499530815