Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1 95.1 1e-14 seq444 82.4 7e-11 >seq1 Length=88624873 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || ||||| |||||||| || |||||||| ||||| |||||||| ||||| |||||| Sbjct 4811181 TGATACTCGGAAACTCGCTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 4811122 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 4811121 ATAAAATCAAAGGGATT 4811105 Score = 86.0 bits (94), Expect = 5e-12 Identities = 86/111 (77%), Gaps = 3/111 (3%) Strand=Plus/Minus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || |||||||| ||||| || || ||||||||||| ||||| || || | Sbjct 4800264 AAAATCTT---ACCAAGTTTTCATTTACAATTCCATCACTGGCTGCGAAAAAGGCTAAGA 4800208 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCA 5031 || || ||||| |||| || || || || || || ||||||||||||| Sbjct 4800207 TGTGGGAAATAAAATACTTCTCCTCTGGTTTGAGCTTGTTCCAGTGGGGCA 4800157 >seq444 Length=14007822 Score = 82.4 bits (90), Expect = 7e-11 Identities = 133/189 (70%), Gaps = 8/189 (4%) Strand=Plus/Minus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || |||| || ||||| | || | | ||| |||||||||||| || |||| Sbjct 1471036 AGCTCTCGTGAAAAGGGACATTCAGCTAGCTCTTCTTTCTGGGTGCTACGGAAGAGTAGC 1470977 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| ||||||| ||||||| |||||||| || || | || | || || | |||| Sbjct 1470976 TCCACGATCTGGCTTGGCAGCCAAACACTTCATAGATGCTGG-ACTGGGGTCACAGATGA 1470918 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| || |||||||| || || || | ||| ||||||| |||||| | | | Sbjct 1470917 AGATTACAGAGGAAATGT----GTTATGCTATTTTATTTTGGCAAAGAAAAGTTTGAAAT 1470862 Query 31942 TATaaaaaa 31950 || |||||| Sbjct 1470861 TAAAAAAAA 1470853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427033304187623