Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5 114 2e-20 seq334 105 9e-18 seq78 86.0 9e-12 seq29 86.0 9e-12 >seq5 Length=4632403 Score = 114 bits (126), Expect = 2e-20 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 3954346 TGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 3954287 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || ||| |||||||| |||||||| ||||| || || | | |||||| Sbjct 3954286 TCATTATTCCCCNNNNNCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 3954227 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 3954226 TTTCTTACACCAT 3954214 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| || |||| || ||||| | || | || Sbjct 3939185 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGC 3939126 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||||||||| || | ||| |||||||| | || || ||||||| || Sbjct 3939125 TCTTCCTTTCCTGTATTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 3939066 Query 78123 TCTAGATATATTGC 78136 || || || || || Sbjct 3939065 TCCAGGTAAATAGC 3939052 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 77704 CTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAG 77763 ||||||||| | ||| ||||| || ||| || || || || || || |||||||| | Sbjct 3940747 CTACCTCATCTTTGCTGGTATATTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTG 3940688 Query 77764 TGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAG 77823 | ||||| || || |||||||||||| ||| || || || || || || || |||| | Sbjct 3940687 TTCCCAGGTTCTGCTGGTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATGTACGGGG 3940628 Query 77824 TCCCGGTTTCAATCTGTGATTCGATAAT 77851 | || || || |||| || |||||||| Sbjct 3940627 TACCCGTCTCTGTCTGAGACTCGATAAT 3940600 >seq334 Length=75508170 Score = 105 bits (116), Expect = 9e-18 Identities = 198/287 (69%), Gaps = 7/287 (2%) Strand=Plus/Plus Query 76899 ATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTT 76958 ||||| || |||| ||||| |||||||| |||||||| |||||||||||| |||| || Sbjct 7451498 ATATGGATGTTCACAGACTGGCTTTGATCAATGAAAGCACCTCTATCAGCCACCATCTTG 7451557 Query 76959 ATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGA 77018 | || || | |||| ||||||| | | || ||| || || | |||||| ||| Sbjct 7451558 AGAACAGTTTCCTGAGAGATTTCCCGTACCATCTTATAAAGCTGCTTCAAATCATCAGGA 7451617 Query 77019 AGGT-TTGT--ATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCA 77075 | | | || | | || | || ||| ||| ||||| ||| || || || ||| Sbjct 7451618 ATTTCTAGTACACTCTGTGTAGAGCCATTGCCTGCAATAATCTGATTTTTCATTTCTTCA 7451677 Query 77076 TTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCT 77135 ||||| || | | ||| || | | | | | |||||||| || | ||| ||||| Sbjct 7451678 TTCCATAACCT-CACTCAGTAAGATGTTTCCATAAGTGAGGATTTACAACCTGACATTCT 7451736 Query 77136 CCAGACAATAC---TCTACGAGTGTAAATATTACTGGTATATGGTTC 77179 || |||||||| ||| |||||||| || || |||||| | ||||| Sbjct 7451737 CCTGACAATACTCTTCTTCGAGTGTAGATGTTGCTGGTACAAGGTTC 7451783 >seq78 Length=41504856 Score = 86.0 bits (94), Expect = 9e-12 Identities = 225/340 (66%), Gaps = 24/340 (7%) Strand=Plus/Minus Query 45877 CCAGTGGATCCAAATCCTTGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCCTTC 45936 |||||||| ||||| ||| || | ||||| || ||| || ||| ||||| | Sbjct 91992 CCAGTGGAACCAAAGCCTCCAGAAGCCCTTTCGGTGTTATCCAGTCCTTGAACTTCTTCT 91933 Query 45937 AGATCAGG---ATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | || || |||||| || ||| | | || || || || || | |||||| | || Sbjct 91932 ATTTCTGGGTAATAATAAATTTGTTCACAAATGAGCTGGGCAATGCGATCACCTTTCCTT 91873 Query 45994 ATTTCAAA-TATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATC 46052 | |||||| | | ||||||||| ||| || | ||| ||||| | ||||||||||| Sbjct 91872 ACTTCAAACTTTTTCTTTTCCAAAATTACACAACACGACACCAATACTTCCTCTATAATC 91813 Query 46053 TTCATCTATTACTCCCCCTCCCACATCGATACCTTTTAGAGACAGTCCAGATCTAGGAGC 46112 |||||| || || || |||| ||||| || || || ||||||| | || Sbjct 91812 TTCATCGATGACCCCAGCTCCAACATCTAT--------GA---AG-CCAGATCGTGACGC 91765 Query 46113 TATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATC 46168 | ||||||| | ||||| |||| || ||| ||||||| ||||| | || | Sbjct 91764 TGCTCTTCCAAAGCACCCAGAA----GGCAGAGTGATCTGAATATCCGTTTTCACAAAGC 91709 Query 46169 TCCTTTCTCCAGGAGGGATAGTATAGTCGTACGCACTGTA 46208 || | ||| | || |||||||| || |||||||| Sbjct 91708 GTTTTCCCGTAGGTTGTATTGTATAGTCATAGGCACTGTA 91669 >seq29 Length=3441549 Score = 86.0 bits (94), Expect = 9e-12 Identities = 108/146 (74%), Gaps = 8/146 (5%) Strand=Plus/Plus Query 47790 GTTCTT-TAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGAG-----ACATAACT 47843 |||||| ||||||||| |||| || | |||| ||| || | || | |||||||| Sbjct 3374155 GTTCTTCTAAAAGTCAGCATCCAATGTAAAAGAATTCTC--CGTGGGGCTGGACATAACT 3374212 Query 47844 CCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGAT 47903 ||||| | ||||| || || || | ||||| || || || || || ||||||| || Sbjct 3374213 CCCATCCTCTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCCAGAGAA 3374272 Query 47904 ATATTTTCCATAAAATCAAATGGATT 47929 ||||| ||||| || ||||||||||| Sbjct 3374273 ATATTCTCCATGAAGTCAAATGGATT 3374298 Score = 86.0 bits (94), Expect = 9e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460 |||||| | |||||||| || | ||||| ||||||||||| ||||| ||||| || || Sbjct 3376370 ATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGC 3376429 Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 ||||| || ||||| ||||| | || |||||||| || || || Sbjct 3376430 GATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTC 3376474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694641612399840