Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21]
3,131 sequences; 2,716,396,567 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq5 114 2e-20
seq334 105 9e-18
seq78 86.0 9e-12
seq29 86.0 9e-12
>seq5
Length=4632403
Score = 114 bits (126), Expect = 2e-20
Identities = 104/133 (78%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | ||
Sbjct 3954346 TGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 3954287
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||| || ||| |||||||| |||||||| ||||| || || | | ||||||
Sbjct 3954286 TCATTATTCCCCNNNNNCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 3954227
Query 77247 TTTCTGAGACCAT 77259
||||| | |||||
Sbjct 3954226 TTTCTTACACCAT 3954214
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062
||||||||||| |||||||| || ||||| || |||| || ||||| | || | ||
Sbjct 3939185 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGC 3939126
Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122
||||| |||||||||||||| || | ||| |||||||| | || || ||||||| ||
Sbjct 3939125 TCTTCCTTTCCTGTATTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 3939066
Query 78123 TCTAGATATATTGC 78136
|| || || || ||
Sbjct 3939065 TCCAGGTAAATAGC 3939052
Score = 91.5 bits (100), Expect = 2e-13
Identities = 109/148 (74%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 77704 CTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAG 77763
||||||||| | ||| ||||| || ||| || || || || || || |||||||| |
Sbjct 3940747 CTACCTCATCTTTGCTGGTATATTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTG 3940688
Query 77764 TGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAG 77823
| ||||| || || |||||||||||| ||| || || || || || || || |||| |
Sbjct 3940687 TTCCCAGGTTCTGCTGGTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATGTACGGGG 3940628
Query 77824 TCCCGGTTTCAATCTGTGATTCGATAAT 77851
| || || || |||| || ||||||||
Sbjct 3940627 TACCCGTCTCTGTCTGAGACTCGATAAT 3940600
>seq334
Length=75508170
Score = 105 bits (116), Expect = 9e-18
Identities = 198/287 (69%), Gaps = 7/287 (2%)
Strand=Plus/Plus
Query 76899 ATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTT 76958
||||| || |||| ||||| |||||||| |||||||| |||||||||||| |||| ||
Sbjct 7451498 ATATGGATGTTCACAGACTGGCTTTGATCAATGAAAGCACCTCTATCAGCCACCATCTTG 7451557
Query 76959 ATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGA 77018
| || || | |||| ||||||| | | || ||| || || | |||||| |||
Sbjct 7451558 AGAACAGTTTCCTGAGAGATTTCCCGTACCATCTTATAAAGCTGCTTCAAATCATCAGGA 7451617
Query 77019 AGGT-TTGT--ATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCA 77075
| | | || | | || | || ||| ||| ||||| ||| || || || |||
Sbjct 7451618 ATTTCTAGTACACTCTGTGTAGAGCCATTGCCTGCAATAATCTGATTTTTCATTTCTTCA 7451677
Query 77076 TTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCT 77135
||||| || | | ||| || | | | | | |||||||| || | ||| |||||
Sbjct 7451678 TTCCATAACCT-CACTCAGTAAGATGTTTCCATAAGTGAGGATTTACAACCTGACATTCT 7451736
Query 77136 CCAGACAATAC---TCTACGAGTGTAAATATTACTGGTATATGGTTC 77179
|| |||||||| ||| |||||||| || || |||||| | |||||
Sbjct 7451737 CCTGACAATACTCTTCTTCGAGTGTAGATGTTGCTGGTACAAGGTTC 7451783
>seq78
Length=41504856
Score = 86.0 bits (94), Expect = 9e-12
Identities = 225/340 (66%), Gaps = 24/340 (7%)
Strand=Plus/Minus
Query 45877 CCAGTGGATCCAAATCCTTGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCCTTC 45936
|||||||| ||||| ||| || | ||||| || ||| || ||| ||||| |
Sbjct 91992 CCAGTGGAACCAAAGCCTCCAGAAGCCCTTTCGGTGTTATCCAGTCCTTGAACTTCTTCT 91933
Query 45937 AGATCAGG---ATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993
| || || |||||| || ||| | | || || || || || | |||||| | ||
Sbjct 91932 ATTTCTGGGTAATAATAAATTTGTTCACAAATGAGCTGGGCAATGCGATCACCTTTCCTT 91873
Query 45994 ATTTCAAA-TATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATC 46052
| |||||| | | ||||||||| ||| || | ||| ||||| | |||||||||||
Sbjct 91872 ACTTCAAACTTTTTCTTTTCCAAAATTACACAACACGACACCAATACTTCCTCTATAATC 91813
Query 46053 TTCATCTATTACTCCCCCTCCCACATCGATACCTTTTAGAGACAGTCCAGATCTAGGAGC 46112
|||||| || || || |||| ||||| || || || ||||||| | ||
Sbjct 91812 TTCATCGATGACCCCAGCTCCAACATCTAT--------GA---AG-CCAGATCGTGACGC 91765
Query 46113 TATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATC 46168
| ||||||| | ||||| |||| || ||| ||||||| ||||| | || |
Sbjct 91764 TGCTCTTCCAAAGCACCCAGAA----GGCAGAGTGATCTGAATATCCGTTTTCACAAAGC 91709
Query 46169 TCCTTTCTCCAGGAGGGATAGTATAGTCGTACGCACTGTA 46208
|| | ||| | || |||||||| || ||||||||
Sbjct 91708 GTTTTCCCGTAGGTTGTATTGTATAGTCATAGGCACTGTA 91669
>seq29
Length=3441549
Score = 86.0 bits (94), Expect = 9e-12
Identities = 108/146 (74%), Gaps = 8/146 (5%)
Strand=Plus/Plus
Query 47790 GTTCTT-TAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGAG-----ACATAACT 47843
|||||| ||||||||| |||| || | |||| ||| || | || | ||||||||
Sbjct 3374155 GTTCTTCTAAAAGTCAGCATCCAATGTAAAAGAATTCTC--CGTGGGGCTGGACATAACT 3374212
Query 47844 CCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGAT 47903
||||| | ||||| || || || | ||||| || || || || || ||||||| ||
Sbjct 3374213 CCCATCCTCTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCCAGAGAA 3374272
Query 47904 ATATTTTCCATAAAATCAAATGGATT 47929
||||| ||||| || |||||||||||
Sbjct 3374273 ATATTCTCCATGAAGTCAAATGGATT 3374298
Score = 86.0 bits (94), Expect = 9e-12
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 48401 ATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATATTTTCAATTGC 48460
|||||| | |||||||| || | ||||| ||||||||||| ||||| ||||| || ||
Sbjct 3376370 ATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGC 3376429
Query 48461 CATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505
||||| || ||||| ||||| | || |||||||| || || ||
Sbjct 3376430 GATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTC 3376474
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694641612399840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |