Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5 123 4e-23 seq29 84.2 3e-11 >seq5 Length=4632403 Score = 123 bits (136), Expect = 4e-23 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| |||||||||||||| || ||||||||||| ||||| | || Sbjct 3954346 TGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 3954287 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || ||| ||||||||||||||||| ||||| || || | | |||||| Sbjct 3954286 TCATTATTCCCCNNNNNCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 3954227 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 3954226 TTTCTTACACCAT 3954214 Score = 86.0 bits (94), Expect = 9e-12 Identities = 110/150 (73%), Gaps = 4/150 (3%) Strand=Plus/Minus Query 76299 CTACCTCAT--TAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGAT 76356 ||||||||| | || ||| ||||| || ||| || ||||| || || || || ||||| Sbjct 3940747 CTACCTCATCTTTGC--TGGTATATTCTACTATTTCTGTGCACAGGTTGCTGCATTTGAT 3940690 Query 76357 AGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGG 76416 ||||| || || || |||||||||||| ||||| || || || || || | |||| Sbjct 3940689 TGTTCCCAGGTTCTGCTGGTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATGTACGG 3940630 Query 76417 AGTTCCAGTTTCAATCTGTGATTCGATAAT 76446 || || || || |||| || |||||||| Sbjct 3940629 GGTACCCGTCTCTGTCTGAGACTCGATAAT 3940600 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 75950 GATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAAC 76009 || || | ||| ||||| || | || | || | ||||| || || || || || | Sbjct 3949205 GAGCCTTCATAAGTTTCATACGGACCATGCTCCTTGGCTAGATCACAGCTGGCTTCCAGG 3949146 Query 76010 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCA 76069 || || |||||||| || || || || | |||||| || || ||||| |||| ||| Sbjct 3949145 GCTCCATAATAAATAGTCTCAAAGATTTGCTTATTTAGTAACTGGGCTTCTGGACTCTCA 3949086 Query 76070 AAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGT 76129 |||||||| | || ||||| |||||||| || || || || ||||| ||||| || Sbjct 3949085 AAAGGATATCTCATCAGGATAAAAGCATCTGCCAGGCCTTGTACACCAATTCCAATGGGG 3949026 Query 76130 CTATGTCTCTTATTGGA 76146 | ||| | ||||| || Sbjct 3949025 CGATGACGTTTATTTGA 3949009 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 76598 ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGT 76657 || |||||||| |||||||| || ||||| || |||| || ||||| | || | | Sbjct 3939185 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACGCTGC 3939126 Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717 ||||| |||||||||||||| || | ||| || ||||| | || || ||||||| || Sbjct 3939125 TCTTCCTTTCCTGTATTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCAAGGC 3939066 Query 76718 TCTAGATATATCGC 76731 || || || || || Sbjct 3939065 TCCAGGTAAATAGC 3939052 >seq29 Length=3441549 Score = 84.2 bits (92), Expect = 3e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||| | ||| ||||| || | ||||| |||||||| |||||||||||||| || || Sbjct 3376370 ATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGC 3376429 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCT 46995 ||||| || ||||| ||||| | || || || || || || ||| Sbjct 3376430 GATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTCT 3376475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712906497529920