Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq87 136 9e-27 seq578 131 4e-25 seq789 107 4e-18 seq889 87.8 4e-12 seq52 87.8 4e-12 seq322 86.0 1e-11 >seq87 Length=1495935 Score = 136 bits (150), Expect = 9e-27 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || ||||| || ||||||||||| |||| | || | ||||||| Sbjct 1203156 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCT 1203097 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| |||||||||||||| | | ||| || ||||| ||| Sbjct 1203096 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 1203037 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | | |||| ||| ||| || || || || || Sbjct 1203036 TGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCGAGGGTGATG 1202980 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||| ||||||||||||| |||||| Sbjct 1202979 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 1202945 Score = 129 bits (142), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| || | | || | ||||||| Sbjct 1202928 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCATCT 1202869 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| |||||||||||||| | | ||| || ||||| ||| Sbjct 1202868 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 1202809 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| |||| | | |||| ||| ||| || || || || || Sbjct 1202808 TGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCGAGGGTGATG 1202752 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || ||||| ||||| ||||||||||||| ||||||| Sbjct 1202751 GTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATT 1202716 >seq578 Length=10717883 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | |||||| || || |||||||||||||| ||||||||||| || | | ||| Sbjct 1250984 CCTCAGACGGAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGT 1250925 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | |||||||| || || || || ||||| |||||||||||||| | | || || Sbjct 1250924 GCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCC 1250865 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||| || || || || || || ||| |||| | | |||| ||| ||||| || Sbjct 1250864 TTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACTTCCAG 1250805 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || || ||||||||||||| |||||| Sbjct 1250804 GGTGATGGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 1250763 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || ||||| |||||||| ||||||||||| || | | ||| | |||||| Sbjct 1250746 AGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCT 1250687 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | || ||||| || || Sbjct 1250686 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 1250627 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| |||| | | |||| ||| || || || || || || Sbjct 1250626 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTC 1250567 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || |||||||||||||||| |||||| Sbjct 1250566 TTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1250535 Score = 104 bits (114), Expect = 5e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || ||||| |||||||| ||||||||||| || | | ||| | |||||| Sbjct 1250518 AGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCT 1250459 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | || ||||| || || Sbjct 1250458 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGAATGCCTTCTTTATCC 1250399 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || | || ||| |||| | |||| ||| || || || | || || Sbjct 1250398 TGGATCTTGTCCTTCACATTCTCAGTGGTGTCGCTGGGCTCCACCTCCAGGATGATGGTC 1250339 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||| || || || |||||||||| |||||||| Sbjct 1250338 TTGCCAGTCAGGGTTTTCACGAAGATTTGCATTTT 1250304 >seq789 Length=7921018 Score = 107 bits (118), Expect = 4e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 |||||| | |||||||| ||||| ||||| |||| ||||||||||| | ||||| | Sbjct 5847182 GAGTCTCAACACAAGATGGAGAGTGGACTCCCTTTGAATGTTGTAATCAGACAAAGTGCG 5847123 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || || || | ||||| ||||| ||||| || | | |||||||| Sbjct 5847122 TCCATCTTCCAGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTC 5847063 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || || || ||| | |||| |||| || ||| || | || || Sbjct 5847062 CTTATCTTGGATCTTGGCCTTTACATTTTCTATAGTGTCGGAGGGCTCAACCTGGAGGGT 5847003 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || | ||||| || || || ||||| | |||||| || Sbjct 5847002 GATGGTCCTCCCCGTAAGGGTTTTTACGAAAATCTGCATCTT 5846961 >seq889 Length=60641186 Score = 87.8 bits (96), Expect = 4e-12 Identities = 139/197 (71%), Gaps = 7/197 (4%) Strand=Plus/Minus Query 151911 GACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCG 151970 |||||||| || |||||||| || | | ||| | || || || || ||| | ||| Sbjct 60498853 GACTCTTTCTGAATGTTGTAGTCTGAGAGAGTCCGACCGTCCTCCAGCTGTTTGCTGGCA 60498794 Query 151971 AAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACA 152030 || || || | ||||||| | | ||| |||||||| ||||| |||| ||||||| Sbjct 60498793 AATATCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATTTGGC-TTTGACA 60498735 Query 152031 GTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 |||| | |||| ||| ||| || ||||| || || || |||||| | || ||| Sbjct 60498734 TTCTCACTGGTGTC---ACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCATTAGGGTC 60498678 Query 152088 TTCACGAAGACCTGCAT 152104 |||||||| | |||||| Sbjct 60498677 TTCACGAATATCTGCAT 60498661 >seq52 Length=2480672 Score = 87.8 bits (96), Expect = 4e-12 Identities = 118/163 (72%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTC- 151944 |||||| | |||||||||||||| |||| ||||| ||||||||| | | ||||| | Sbjct 411655 GAGTCTCAACACAAGATGAAGAGTGAACTCCTTTTGAATGTTGTAACCAGACAAAGTACA 411596 Query 151945 TCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 ||| |||||| || || || || ||||| |||| ||||| || | | ||||||| Sbjct 411595 TCCAATCTTCCAGTTGCTTACCAGCAAAGATCAGCCCTTGCTGATCAGGAGGAATTCCTT 411536 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGA 152047 |||| || || || || || ||| | ||||| |||| || Sbjct 411535 CCTTATCCTGGATCTTGGCCTTTACATTTTCTACAGTGTCCGA 411493 >seq322 Length=21489822 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 |||||| | |||||||||||||| ||||| |||| ||||||||||| | ||||| Sbjct 7411863 GAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTTAATGTTGTAATCAGACAAAGTATG 7411922 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| || || | || ||||| ||||| ||||| || | | |||||||| Sbjct 7411923 TCCATCTTCCAGTTGCTTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTC 7411982 Query 152006 CTTTTCTTGAATTTT 152020 ||| || || || || Sbjct 7411983 CTTATCCTGGATCTT 7411997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153774513396901