Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq87 147 5e-30 seq578 143 6e-29 seq789 132 1e-25 seq89 127 4e-24 seq889 102 2e-16 seq700 89.7 1e-12 >seq87 Length=1495935 Score = 147 bits (162), Expect = 5e-30 Identities = 171/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | |||||| || ||||| || | ||| || || |||||||||||||||| Sbjct 1202943 CCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 1202884 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| || || || || || || ||||||| | || |||||| || Sbjct 1202883 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGG 1202824 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || |||||||||||||||||||| || || || | || || ||||| | || || Sbjct 1202823 ATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 1202764 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTC 283103 ||||| ||||| ||||| || || | ||||| ||||| ||||||||| || Sbjct 1202763 TCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATTGTC 1202713 Score = 136 bits (150), Expect = 8e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || | |||||| || ||||| || | ||| || || |||||||||||||| | Sbjct 1203172 ACCTCCCCTCAGGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 1203113 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || ||||| ||||| || || || || || || ||||||| | || |||||| || Sbjct 1203112 GAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGG 1203053 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || |||||||||||||||||||| || || || | || || ||||| | || || Sbjct 1203052 GATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 1202993 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 1202992 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 1202945 >seq578 Length=10717883 Score = 143 bits (158), Expect = 6e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | |||||| || ||||| || | ||| ||||| |||||||||||||||| | Sbjct 1250761 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAA 1250702 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| || || || || || |||||||| | | || |||||| ||| Sbjct 1250701 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGA 1250642 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || || || |||||||| || || || | || || ||||| | || || Sbjct 1250641 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 1250582 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || || ||||| ||||| || |||| |||||| ||||| |||||||| Sbjct 1250581 TCCAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1250535 Score = 138 bits (152), Expect = 2e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282871 AACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG 282930 ||||||| | ||| || || ||||| || | || ||||| |||||||||||||||| Sbjct 1250991 AACCACCCCTCAGACGGAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAG 1250932 Query 282931 CAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 ||| ||||| ||||| || || || || || |||||||| | | || |||||| | Sbjct 1250931 AAAGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAG 1250872 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| || || || || |||||||| || || || | || || ||||| | || | Sbjct 1250871 GAATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCA 1250812 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 |||| || ||||| ||||| || |||| ||||| ||||| |||||||| Sbjct 1250811 CTTCCAGGGTGATGGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 1250763 Score = 125 bits (138), Expect = 1e-23 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| | |||||| || ||||| || | ||| ||||| |||||||||||||||| | Sbjct 1250533 CCACCTCTCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAA 1250474 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| || || || || || |||||||| | | || |||||| ||| Sbjct 1250473 AGAGTGCGACCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGA 1250414 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || || || |||||||| | || || | || | ||||| | || || Sbjct 1250413 ATGCCTTCTTTATCCTGGATCTTGTCCTTCACATTCTCAGTGGTGTCGCTGGGCTCCACC 1250354 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATATACAAA 283112 || || |||| ||||| || |||| || || ||||| || |||||||| | ||||| Sbjct 1250353 TCCAGGATGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATTTGCATTTTGACCTACAAT 1250294 Query 283113 TA 283114 || Sbjct 1250293 TA 1250292 >seq789 Length=7921018 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || | | || ||||| | ||| || |||| |||||||| |||| Sbjct 5847191 ACCACCACGGAGTCTCAACACAAGATGGAGAGTGGACTCCCTTTGAATGTTGTAATCAGA 5847132 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | ||||| ||||| || ||||| || || ||||||||| | ||| || ||| || Sbjct 5847131 CAAAGTGCGTCCATCTTCCAGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGG 5847072 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || ||||| ||||||||||| || ||||| | || |||||||| || | || || Sbjct 5847071 AATTCCTTCCTTATCTTGGATCTTGGCCTTTACATTTTCTATAGTGTCGGAGGGCTCAAC 5847012 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 | ||| ||||| ||| | ||||| | || || ||||| |||||||| || Sbjct 5847011 CTGGAGGGTGATGGTCCTCCCCGTAAGGGTTTTTACGAAAATCTGCATCTT 5846961 >seq89 Length=40145203 Score = 127 bits (140), Expect = 4e-24 Identities = 164/227 (72%), Gaps = 7/227 (3%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||||| |||||||| |||| ||| |||||||||||||||||||| | Sbjct 36668691 CCACCTCGCAGGCACAGTACCAGGTGTAGGGTGGACTCTTTTTGGATGTTGTAGTCTGAG 36668750 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || | |||||||| || ||||| | ||| || |||| | || || ||| || Sbjct 36668751 AGAGTCCAACCATCCTCCAGCTGTTTGCTGGCGAATATCAGGCACTGCTGTTCAGGTGGG 36668810 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || | ||||||||||||||| || | ||| || | ||||| | ||||| Sbjct 36668811 ATGCTCTCCTTGTCTTGGATTTTGGTTTTGAC-------TTGGTGTCACTGGGCTCGACC 36668863 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || | |||||||||||| ||||| ||||| |||||||| Sbjct 36668864 TCGAGGATGGTGTTCTTACCCGTCAGGGTCTTCACGAAGATCTGCAT 36668910 >seq889 Length=60641186 Score = 102 bits (112), Expect = 2e-16 Identities = 138/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||||| || ||||||||||| | || || || || ||||| || ||||| | |||||| Sbjct 60498850 TCTTTCTGAATGTTGTAGTCTGAGAGAGTCCGACCGTCCTCCAGCTGTTTGCTGGCAAAT 60498791 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| | | ||||| || || || |||||||||||||| || ||||| || | Sbjct 60498790 ATCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGAT-TTGGCTTTGACATTC 60498732 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACG 283088 || | ||||| | || || || || ||||| ||||| ||| | | ||||| ||| Sbjct 60498731 TCACTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCATTAGGGTCTTCACG 60498672 Query 283089 AATATCTGCAT 283099 ||||||||||| Sbjct 60498671 AATATCTGCAT 60498661 >seq700 Length=8709706 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 282995 ACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTC 283054 ||| |||||||||||||| || ||||| || | ||||| ||||| | || || || Sbjct 8134118 ACCTTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCGCTGGGCTCAACCTC 8134059 Query 283055 GAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTT 283101 || ||||| ||||| ||||||| ||||| |||||||||||||||| Sbjct 8134058 AAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAATATCTGCATTT 8134012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046697209075674