Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq34 145 1e-29 seq200 125 1e-23 >seq34 Length=50712660 Score = 145 bits (160), Expect = 1e-29 Identities = 172/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 ||||||||||| | || ||| ||| |||||||| || ||||| || ||||||||||| Sbjct 34197789 GTCTGGAACAGGCGTTCATCATCCCACTCTGGATGCTCCTGTTTAAGCACATCGCACACT 34197730 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||| || |||| |||||||| |||||||||||||| || || || ||||| || || Sbjct 34197729 CTGTTATGCTCCCGCAGCCAGATGGTGGCGTACATCATCAGGCCTGGCACCAGACCGAAG 34197670 Query 9376 GCCTCTTGACCGACAGCCAGAC--GCATGTTTTCGGGCACTTCGGGAGGATAGATCATGT 9433 |||| || || ||||| | | ||||| ||||| | | ||| || || ||||| | Sbjct 34197669 ACCTCCTGGCCCACAGCAAAGCGTGCATG--CTCGGGGATGTAGGGTGGGTACATCATCT 34197612 Query 9434 GCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 || || |||||||| | ||| || ||||| || || ||||| |||| Sbjct 34197611 CTACTTGAGTTTCTTTGACAGTGGGAGGGTACATCTCTCCATCAATTATCT 34197561 Score = 145 bits (160), Expect = 1e-29 Identities = 202/283 (71%), Gaps = 0/283 (0%) Strand=Plus/Minus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||| ||||| ||||| | |||| |||||||| || | || | ||||||||| Sbjct 34199402 GGACAGCCCTTCACGTTATTGCAGATGAGAGACTGGATGGAGGCAGTGTTGACGATCTGA 34199343 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| ||||| || || || || ||||||||||| || ||||| || ||| Sbjct 34199342 AAACCCACTTCTCCTCCAAAAGTACTCGGCTTCCAGTAGTGAGGTGAGCATATAGGGTTA 34199283 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 |||| || ||||| | |||||| || || |||| ||| | ||| |||| ||||| || Sbjct 34199282 CCCATAAGTCCTTTCAAGGAGAATGGTGCTCCCATCTCCACCATGGTCTCCCCGAAAATA 34199223 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 || | || || || |||||||| | | ||| |||||||||| || || | ||| Sbjct 34199222 GCATCTGGCCGAGGTTTTTCCACGAGAAGGGCGGGATACAGCTCCATCGCATCAATGTCA 34199163 Query 8543 CCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 ||||| ||||| | ||| ||||| || ||||| || |||| Sbjct 34199162 CCGTAGAGGGCTTCCAATTCTGCAGCCATTTCCTTCTCACCTG 34199120 Score = 105 bits (116), Expect = 1e-17 Identities = 188/267 (70%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | ||| || ||||| || ||||| ||||| || | |||||||| || || Sbjct 34198320 CTTACCCTGCCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGTAAGTCCATGTTCT 34198261 Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTT-AACGTAGTCATACTTTGTTTTATCAATC 9060 | | ||| || |||||||||| || ||| || || | | |||| || |||||| Sbjct 34198260 ACTAATATAGAGTTGTTGTAGAGAAACTGTTGAAAGTTATAA-ACTTGGTC--ATCAATT 34198204 Query 9061 TCAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATA 9120 | ||| | || |||| || | |||||||||||||| | |||||||||||||| || Sbjct 34198203 TGAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATACAGCGTGTTAAACTCGGAAGCAATG 34198144 Query 9121 CGATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAA 9179 || || ||||||||||| | | ||| ||||| || || | |||| ||| | || Sbjct 34198143 CGGTTCTGGTACTGGAATTGCTGGTTGAAA-AGCAGCTCTGGGTCAAACTTCAGTTTGAA 34198085 Query 9180 ATGGTAGCCGCTGAGCTGCTGAACGTA 9206 ||| || ||||| | ||||| || || Sbjct 34198084 ATGATACCCGCTCAAATGCTGTACATA 34198058 >seq200 Length=27928671 Score = 125 bits (138), Expect = 1e-23 Identities = 197/282 (70%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||| |||| |||| |||||||| || | || || | ||||||| | Sbjct 11709634 GGACAGGTCTTGGTGTTGAGGCAGACTAGCTTCTTCAGTGTGGCCGTGTTGACGAGGTTG 11709693 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||||| || || || || ||||| |||||||||||| ||||||||||||| || Sbjct 11709694 AAGCCCACCTCACCACCAAATGTGCTTGGCTTCCAGTACTGCGGGGAGCAGATGGGATTT 11709753 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 ||| ||| || |||||||| || |||||||| | ||||| || ||||| || |||||| Sbjct 11709754 CCCAGGAGTCCCTTGAGGGAAAAGGGAGCCCCAATCTCGATCATACTCTCCCCAAAGATG 11709813 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 | ||| || || ||||| | | || || | ||| | ||| | ||| |||| |||| Sbjct 11709814 GAGTTCGGTAGGCATTTTTCAAGGAGCAACCCTGGGTAGAACTCTAAAGCATCGATGTCT 11709873 Query 8543 CCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || || | || | || || || |||||||| || ||| Sbjct 11709874 CCATATAACTCCTCCAACTCAGCTGCCATCTCCTTGTCCCCT 11709915 Score = 96.9 bits (106), Expect = 5e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| || ||||||||||| || || || ||| ||| ||||| Sbjct 11716480 TCACCTATGAGGATGAGGCGGGTGGTCTGGAAGAGCTGTTCATCATCCCAGGTGGGATGC 11716539 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| ||||| | || ||||| | |||||| || | ||||||| ||||| |||| | Sbjct 11716540 TCTGCCTTCAGCAGGTCACACACACGGTTGTGCTCACGCAGCCAGAGCGTGGCATACAGC 11716599 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 |||||||| || | ||| ||||| | ||||| || || |||| Sbjct 11716600 ATGAGCCCCGGCAGCAGCCCAAACACTTCTTGGCCCACGGCCA 11716642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716848743234240