Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq234 96.9 5e-15 >seq234 Length=25869412 Score = 96.9 bits (106), Expect = 5e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 156270 CGAGCCATTAATGTTTTACCGCACCCAGGAGGTCCGTATAACAATACTCCTTTTATATGT 156329 ||||||| | || ||||| || || || || || ||||||| | ||||| | |||| Sbjct 13622435 CGAGCCAAGAGAGTCTTACCACATCCTGGGGGCCCATATAACAGGATGCCTTTAACATGT 13622376 Query 156330 TTACAACCTAATTTTTCAGTTATTTCTACCGGAACTGATCTGGAAGCAAATGCTCTTCGA 156389 |||||||| | | ||| || ||| |||| | || |||||||||||||| |||| Sbjct 13622375 TTACAACCCATCTGTTCCACAATCTCTGGAGGAAATACTCGGGAAGCAAATGCTCGTCGA 13622316 Query 156390 AAAATGAGAGAAAATTCTTTATCCAATCCCCCCACACCCATTTCCTCAAAATTCCAAT 156447 |||| ||||||||||| |||| || || | ||||||| |||| ||||||| Sbjct 13622315 AAAAAATCTGAAAATTCTTTGTCCAGACCTCCTATTCCCATTTTTCCAAAGTTCCAAT 13622258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667049092344360