Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq578 150 4e-31 seq87 145 2e-29 >seq578 Length=10717883 Score = 150 bits (166), Expect = 4e-31 Identities = 176/235 (75%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| |||| ||||||||||| || || || || || |||| ||| |||| Sbjct 1250299 AGGTCAAAATGC---AAATCTTCGTGAAAACCCTGACTGGCAAGACCATCATCCTGGAGG 1250355 Query 177970 TGGAAAGCTCA--GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 ||| ||| || ||||||| ||||| || || | ||||| ||||| |||||||| || Sbjct 1250356 TGG--AGCCCAGCGACACCACTGAGAATGTGAAGGACAAGATCCAGGATAAAGAAGGCAT 1250413 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 || || |||||||| | || ||||| || || || ||||| |||||||| | ||||| Sbjct 1250414 TCCACCTGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCT 1250473 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | | || || ||| |||| ||||| || || ||||| || || || | || ||| Sbjct 1250474 TTCTGACTACAACATCCAGAAAGAGTCCACTCTGCACCTGGTGCTGCGCCTGAGA 1250528 >seq87 Length=1495935 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || |||||||| || ||||| || || || |||||||||||||||| ||| || | Sbjct 1202948 CAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGG--AGCCCAGTG 1203005 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| ||||| || ||||| || || ||||| || ||||||| Sbjct 1203006 ACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAGC 1203065 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || || ||||| |||||||| | || || |||| || ||| Sbjct 1203066 AGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCCGACTACAACA 1203125 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 1203126 TCCAGAAGGAGTCCACCCTGCACCTGGT 1203153 Score = 141 bits (156), Expect = 2e-28 Identities = 165/221 (75%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || |||||||| || ||||| || || || |||||||||||||||| ||| || | Sbjct 1202720 CAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGG--AGCCCAGTG 1202777 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| ||||| || ||||| || || ||||| || ||||||| Sbjct 1202778 ACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAGC 1202837 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || |||||||| || || ||||| |||||||| | || || | || || ||| Sbjct 1202838 AGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTCTCTGACTACAACA 1202897 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || || | || ||| Sbjct 1202898 TCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGA 1202938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203682911194414