Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20aperea_20[genbank_20GCA_5F000688575.1_202014-01-21] 3,131 sequences; 2,716,396,567 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq87 143 2e-29 seq578 123 2e-23 seq889 104 2e-17 seq89 104 2e-17 seq700 84.2 2e-11 >seq87 Length=1495935 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| ||| ||||||||| ||||| |||||||||||||||||| | || || Sbjct 1203153 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCATCTTCC 1203094 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| ||||| ||||| | ||| ||||| | ||| | || ||||||||| | Sbjct 1203093 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGG 1203034 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||| | | | ||||| || | ||||||||| | || || || || Sbjct 1203033 ATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTG 1202974 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || ||||| ||||| |||||||| Sbjct 1202973 CCAGTGAGGGTCTTCACGAAGATCTGCAT 1202945 Score = 141 bits (156), Expect = 9e-29 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| ||||| ||| ||||||||| ||||| ||||| |||||||||||| Sbjct 1202934 AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGC 1202875 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| ||||| ||||| | ||| ||||| | ||| | || |||| Sbjct 1202874 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 1202815 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 ||||| ||| || ||| | | | ||||| || | ||||||||| | || Sbjct 1202814 TTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCGAGGGTG 1202755 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || ||||| ||||| |||||||| Sbjct 1202754 ATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 1202717 >seq578 Length=10717883 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| ||||| ||| ||| ||||| ||||| ||||| || || ||||| Sbjct 1250752 AGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGA 1250693 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || || || | ||| ||||| | |||| || || Sbjct 1250692 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCT 1250633 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | | |||||||| | ||||||||||| || Sbjct 1250632 TTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTG 1250573 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| ||||| |||||||| Sbjct 1250572 ATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 1250535 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| || ||| ||||| ||||| ||||| || || ||||| Sbjct 1250980 AGACGGAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGA 1250921 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || || || | ||| ||||| | |||| || || Sbjct 1250920 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCT 1250861 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | | |||||||| | |||||| |||| || Sbjct 1250860 TTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACTTCCAGGGTG 1250801 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| ||||| |||||||| Sbjct 1250800 ATGGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 1250763 Score = 111 bits (122), Expect = 1e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| ||||| ||| ||| ||||| ||||| ||||| || || ||||| Sbjct 1250524 AGGCGCAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGA 1250465 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || || || | ||| ||||| | |||| || || Sbjct 1250464 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGAATGCCTTCT 1250405 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || | ||||| | |||||||| | ||||||||||| | Sbjct 1250404 TTATCCTGGATCTTGTCCTTCACATTCTCAGTGGTGTCGCTGGGCTCCACCTCCAGGATG 1250345 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| || || ||||| || ||||| || Sbjct 1250344 ATGGTCTTGCCAGTCAGGGTTTTCACGAAGATTTGCATTTT 1250304 >seq889 Length=60641186 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||| ||||||||||| ||||| ||||| || || |||| || ||||| |||| ||| || Sbjct 60498851 CTCTTTCTGAATGTTGTAGTCTGAGAGAGTCCGACCGTCCTCCAGCTGTTTGCTGGCAAA 60498792 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 ||||||| || | ||||| | || | || |||||||| || ||| |||| || Sbjct 60498791 TATCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGA--TTTGGCTTTGACAT 60498734 Query 41791 CGACAC-AGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 ||| ||||| || | ||| ||||| | || || || || ||| | || ||||| | Sbjct 60498733 TCTCACTGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCATTAGGGTCTTCA 60498674 Query 41850 CGAAAATCTGCAT 41862 |||| |||||||| Sbjct 60498673 CGAATATCTGCAT 60498661 >seq89 Length=40145203 Score = 104 bits (114), Expect = 2e-17 Identities = 149/209 (71%), Gaps = 7/209 (3%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| || || ||| ||| || || ||||| ||||| ||||| || | | || || Sbjct 36668709 ACCAGGTGTAGGGTGGACTCTTTTTGGATGTTGTAGTCTGAGAGAGTCCAACCATCCTCC 36668768 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||| |||| |||||||||||||| ||| || || | || | |||||||||||| | Sbjct 36668769 AGCTGTTTGCTGGCGAATATCAGGCACTGCTGTTCAGGTGGGATGCTCTCCTTGTCTTGG 36668828 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 | ||||| || ||| ||||| || | ||| ||||| | | | | ||| Sbjct 36668829 A--TTTTGGTT-----TTGACTTGGTGTCACTGGGCTCGACCTCGAGGATGGTGTTCTTA 36668881 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| ||||| ||||| |||||||| Sbjct 36668882 CCCGTCAGGGTCTTCACGAAGATCTGCAT 36668910 >seq700 Length=8709706 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||||||||| ||||| ||||| || || |||| || ||||| |||||||| |||||| Sbjct 8134452 TTCTGAATGTTGTAGTCCGAGAGAGTCCGACCGTCCTCCAGCTGTTTGCCGGCAAATATC 8134393 Query 41735 AGGCGCTGTTGGTC 41748 |||||||| ||||| Sbjct 8134392 AGGCGCTGCTGGTC 8134379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462285906577200