Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 288 1e-72
seq3018 100 3e-16
seq3143 82.4 8e-11
>seq3106
Length=22756556
Score = 288 bits (318), Expect = 1e-72
Identities = 592/877 (68%), Gaps = 5/877 (1%)
Strand=Plus/Minus
Query 16663 AACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAG 16722
||| ||||| || || || |||| || | || || || ||||| || || || |||||
Sbjct 217567 AACTCCCATCCTCTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCTAG 217508
Query 16723 AGATATATTCTCCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAG 16782
||| |||||||||||||| ||||| ||||| || ||| | || | |||||
Sbjct 217507 AGAAATATTCTCCATGAAGTCAAATGGATTTTCCACTTGAAAAACCTTGCCAAAGCCCAG 217448
Query 16783 TTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCAT 16842
|| || | || || || || || || || || || ||| | |||||||||||
Sbjct 217447 CTCTAGCATGAGCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAGTTCAT 217388
Query 16843 TCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTC 16902
|| || || || || | || ||||| | || ||||| || || || |
Sbjct 217387 GCCAATCAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACGGCGTT 217328
Query 16903 CTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAG 16962
||||| || | | ||| || ||| |||| | || || || ||||||||
Sbjct 217327 GACGATAATCTCCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTTGAACATCAG 217268
Query 16963 ACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAA 17022
|| ||||| || || || | ||||| ||||||||||| ||||| || ||||| || |
Sbjct 217267 GCAGGCGAAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAG 217208
Query 17023 CCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAA 17082
|||||||| ||| |||||||| | ||| || |||| || || || |||||||| ||
Sbjct 217207 GCCGGGCATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAA 217148
Query 17083 TATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACG 17142
|| || || |||| ||||| || | | ||||| | || || || ||||||| |
Sbjct 217147 GATGCCTTCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTTTGTCCCC 217088
Query 17143 AATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT 17202
|||||| | |||| || | || ||| | || ||| || || ||||| ||
Sbjct 217087 AATCCAGCGCAAGGCCCAGTCCGACTT---CTTCACACAGGGCATGGTCTCGATGGCATT 217031
Query 17203 AAATAATTTCTCTTTTTC-CTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACA 17261
|| | ||| |||| ||| | || | ||||| ||||||||||| || |||||||
Sbjct 217030 GAAGAGGAACTCCCTTTCTCTGGA-ATCTTTGATATAAGTATCGATGAGGAGACTGTACA 216972
Query 17262 TTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTA 17321
|||| || || ||||| |||||||| ||||| || ||||| || || || || || | |
Sbjct 216971 TTTCAGAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGA 216912
Query 17322 TTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGG 17381
|||||||||| | ||| || ||| | | ||| || || || ||||| ||||| ||||
Sbjct 216911 TTTGAACTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGCTGGCGG 216852
Query 17382 CGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGT 17441
| || || |||| | || || || ||| | || || || | || | |||||
Sbjct 216851 CAAAGAAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTTCCCAGT 216792
Query 17442 CCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTT 17501
|| | |||||||| | |||||| || || | |||||||| ||| | || || |
Sbjct 216791 GCTGAATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCTTTCT 216732
Query 17502 TATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538
||||||| | |||||| |||| ||||| || |||||
Sbjct 216731 TATACATCTGCCAAATGTCATGGTATTCGATAGGGAA 216695
>seq3018
Length=3443724
Score = 100 bits (110), Expect = 3e-16
Identities = 81/98 (83%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293
||||| ||||||||||| || |||||||||||||| || ||||| |||||||| |||||
Sbjct 3378011 ATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGCGATCTGG 3378070
Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331
|| ||||| || || || || || | |||||||||||
Sbjct 3378071 AAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTC 3378108
Score = 84.2 bits (92), Expect = 2e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045
|||| ||||||||||| ||||| || ||||| || | |||||||| ||| |||||||
Sbjct 3376780 CCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCT 3376839
Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105
| | ||| || |||| || || || |||||||| || || || || || | ||||| |
Sbjct 3376840 TCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTCCACAGCAGCAAAGG 3376899
Query 17106 C 17106
|
Sbjct 3376900 C 3376900
>seq3143
Length=88675666
Score = 82.4 bits (90), Expect = 8e-11
Identities = 68/83 (82%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293
||||| || |||||||| ||||||||||| |||||||| | |||||| ||| |||||
Sbjct 4804333 ATATAGGTGTCGATGAGCAGGCTGTACATCTCGGAGTGGACGTTCTCGATGAGGATCTGG 4804274
Query 17294 AATCCGTAAAAGCATCGGGCTTC 17316
|| ||||| ||||| ||||| ||
Sbjct 4804273 AAGCCGTAGAAGCAGCGGGCCTC 4804251
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517525260457920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |