Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3106 288 1e-72 seq3018 100 3e-16 seq3143 82.4 8e-11 >seq3106 Length=22756556 Score = 288 bits (318), Expect = 1e-72 Identities = 592/877 (68%), Gaps = 5/877 (1%) Strand=Plus/Minus Query 16663 AACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAG 16722 ||| ||||| || || || |||| || | || || || ||||| || || || ||||| Sbjct 217567 AACTCCCATCCTCTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCTAG 217508 Query 16723 AGATATATTCTCCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAG 16782 ||| |||||||||||||| ||||| ||||| || ||| | || | ||||| Sbjct 217507 AGAAATATTCTCCATGAAGTCAAATGGATTTTCCACTTGAAAAACCTTGCCAAAGCCCAG 217448 Query 16783 TTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCAT 16842 || || | || || || || || || || || || ||| | ||||||||||| Sbjct 217447 CTCTAGCATGAGCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAGTTCAT 217388 Query 16843 TCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTC 16902 || || || || || | || ||||| | || ||||| || || || | Sbjct 217387 GCCAATCAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACGGCGTT 217328 Query 16903 CTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAG 16962 ||||| || | | ||| || ||| |||| | || || || |||||||| Sbjct 217327 GACGATAATCTCCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTTGAACATCAG 217268 Query 16963 ACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAA 17022 || ||||| || || || | ||||| ||||||||||| ||||| || ||||| || | Sbjct 217267 GCAGGCGAAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAG 217208 Query 17023 CCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAA 17082 |||||||| ||| |||||||| | ||| || |||| || || || |||||||| || Sbjct 217207 GCCGGGCATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAA 217148 Query 17083 TATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACG 17142 || || || |||| ||||| || | | ||||| | || || || ||||||| | Sbjct 217147 GATGCCTTCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTTTGTCCCC 217088 Query 17143 AATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT 17202 |||||| | |||| || | || ||| | || ||| || || ||||| || Sbjct 217087 AATCCAGCGCAAGGCCCAGTCCGACTT---CTTCACACAGGGCATGGTCTCGATGGCATT 217031 Query 17203 AAATAATTTCTCTTTTTC-CTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACA 17261 || | ||| |||| ||| | || | ||||| ||||||||||| || ||||||| Sbjct 217030 GAAGAGGAACTCCCTTTCTCTGGA-ATCTTTGATATAAGTATCGATGAGGAGACTGTACA 216972 Query 17262 TTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTA 17321 |||| || || ||||| |||||||| ||||| || ||||| || || || || || | | Sbjct 216971 TTTCAGAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGA 216912 Query 17322 TTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGG 17381 |||||||||| | ||| || ||| | | ||| || || || ||||| ||||| |||| Sbjct 216911 TTTGAACTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGCTGGCGG 216852 Query 17382 CGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGT 17441 | || || |||| | || || || ||| | || || || | || | ||||| Sbjct 216851 CAAAGAAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTTCCCAGT 216792 Query 17442 CCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTT 17501 || | |||||||| | |||||| || || | |||||||| ||| | || || | Sbjct 216791 GCTGAATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCTTTCT 216732 Query 17502 TATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 ||||||| | |||||| |||| ||||| || ||||| Sbjct 216731 TATACATCTGCCAAATGTCATGGTATTCGATAGGGAA 216695 >seq3018 Length=3443724 Score = 100 bits (110), Expect = 3e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 ||||| ||||||||||| || |||||||||||||| || ||||| |||||||| ||||| Sbjct 3378011 ATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGCGATCTGG 3378070 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 || ||||| || || || || || | ||||||||||| Sbjct 3378071 AAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTC 3378108 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| ||||||||||| ||||| || ||||| || | |||||||| ||| ||||||| Sbjct 3376780 CCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCT 3376839 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| || |||| || || || |||||||| || || || || || | ||||| | Sbjct 3376840 TCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTCCACAGCAGCAAAGG 3376899 Query 17106 C 17106 | Sbjct 3376900 C 3376900 >seq3143 Length=88675666 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 ||||| || |||||||| ||||||||||| |||||||| | |||||| ||| ||||| Sbjct 4804333 ATATAGGTGTCGATGAGCAGGCTGTACATCTCGGAGTGGACGTTCTCGATGAGGATCTGG 4804274 Query 17294 AATCCGTAAAAGCATCGGGCTTC 17316 || ||||| ||||| ||||| || Sbjct 4804273 AAGCCGTAGAAGCAGCGGGCCTC 4804251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517525260457920