Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3106 259 5e-64 seq3018 89.7 5e-13 >seq3106 Length=22756556 Score = 259 bits (286), Expect = 5e-64 Identities = 430/618 (70%), Gaps = 5/618 (1%) Strand=Plus/Minus Query 16166 TCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCT 16225 || || ||| |||| | ||||| || ||||| || || |||||||| || || || || Sbjct 217302 TCTGAGGGTCTATGCATCAGGTGCTTGAACATCAGGCAGGCGAAGTCACAGTGCAGGCCC 217243 Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || ||||||||||| ||||| |||||||| || | || ||||| ||| |||||||| Sbjct 217242 TCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCTTC 217183 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 | |||||| |||| ||||| || || ||||| || || || || || | ||||| || Sbjct 217182 AGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTCCACGGCAGCAAAGGCT 217123 Query 16346 ATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCT 16405 | | |||||| | || || || ||||| | | |||||| | |||| || | Sbjct 217122 ACCACGCGTTCCCCATAAGTGGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCAGTCCGAC 217063 Query 16406 TTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTC-CTGAAT 16464 || || | ||| ||| || || ||||| || || | ||| |||| ||| | Sbjct 217062 TT---CTTCACACAGGGCATGGTCTCGATGGCATTGAAGAGGAACTCCCTTTCTCTGGA- 217007 Query 16465 ATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGC 16524 ||| | ||||| ||||| || || | |||||||||||| || || ||||| || ||||| Sbjct 217006 ATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCAGAATGAATGTTTTCCATGGC 216947 Query 16525 TATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTC 16584 ||||| || || ||||| || |||||||| | ||||| ||||| | || || || Sbjct 216946 GATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTCTTGGCTGAACCGCTC 216887 Query 16585 CGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAAT 16644 | ||| |||||||| || || || || || || ||||| || |||| | ||| || Sbjct 216886 CACCAAATTCTCATTGACTATGCCATCGCTGGCGGCAAAGAAAGCCAGAACGTGTGATAT 216827 Query 16645 GAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCAC 16704 || ||| | || || | | || | ||| | | | |||||||| | |||||| Sbjct 216826 AAAGTATCTCTCCTCGGGCTTCAGGGCTTCCCAGTGCTGAATGTCTTTGGAAAGATCCAC 216767 Query 16705 TTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTA 16764 || |||| |||||||||| ||| | || || |||||||| | |||||| |||| ||| Sbjct 216766 CTCCTCTGCCGTCCAAAAGGAGGCCTCGGCTTTCTTATACATCTGCCAAATGTCATGGTA 216707 Query 16765 TTGTATGGGAAATACGAC 16782 || || || || | ||| Sbjct 216706 TTCGATAGGGAAGATGAC 216689 >seq3018 Length=3443724 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || ||||||||||| ||||| |||||||| || | || ||||| ||| |||||||| Sbjct 3376782 TCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCTTC 3376841 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCG 16345 | |||||| |||| ||||| || || ||||| || || || || |||| ||||| || Sbjct 3376842 AGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTCCACAGCAGCAAAGGCT 3376901 Query 16346 ATTAATCGTTCC 16357 | | |||||| Sbjct 3376902 ACCACGCGTTCC 3376913 Score = 87.8 bits (96), Expect = 2e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 ||||| ||||| || || | |||||||||||| || || ||||| || ||||| ||||| Sbjct 3378011 ATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGCGATCTGG 3378070 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTC 16569 || || ||||| || |||||||| | ||||| ||||| Sbjct 3378071 AAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTC 3378108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511394301414080