Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq3129 111 1e-19 >seq3129 Length=43247874 Score = 111 bits (122), Expect = 1e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| || ||||| |||||||| | || ||||| ||||| | ||||| ||||| ||| Sbjct 41738105 ATGGCGCTGCCTCCCTGTCACACCCTCTGCCAGTTCTACGTGGTGAACGGGGAATTGTCC 41738164 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 || || | |||||| | || ||||| |||||||| || || || ||||||||||| | Sbjct 41738165 TGTCAGCTGTACCAGCGCTCTGGGGACATGGGCCTGGGCGTGCCCTTCAACATTGCCAGC 41738224 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACT 19132 || || || || |||||||| | ||||| || || || || Sbjct 41738225 TACGCCCTGCTCACCTACATGATTGCGCACGTCACGGGCCT 41738265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399488692005480