Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq3130 109 4e-19 seq3142 102 6e-17 >seq3130 Length=48363610 Score = 109 bits (120), Expect = 4e-19 Identities = 291/444 (66%), Gaps = 38/444 (9%) Strand=Plus/Minus Query 3967 TATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACA 4026 || |||| || ||| ||||||| || || ||||| ||| | |||||||| || | Sbjct 11403351 TAGTAATCATCCTTTTCATATAGTTGAAGCTTGTATTTACTGCTTTTCTCCTCCTAGGTC 11403292 Query 4027 TTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGA 4086 | |||||| |||| ||| ||||||| ||| ||| | |||| Sbjct 11403291 TCAGAAAGCACACCTGGGTATTCTAGTAAA------------------TCAGCTGCTGGG 11403250 Query 4087 AAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCAT 4146 |||| |||||| ||||| || | | |||| |||||||| || || |||| || | Sbjct 11403249 GAAAATGTGTCATTATCAAATTCCTACGCGATCTGTGTCACAAATAGCTTGAGATGGCCT 11403190 Query 4147 GGATAACTCATAGCTTCTTTATACACAGAACTA--------CCTCCAATTATCCAGACCA 4198 || || | | |||| |||| ||||||||| ||||| | ||||| ||| Sbjct 11403189 GGCCAAGTTACGGCTTTGGTATAAACAGAACTATCATGCCCCCTCCCCT-ATCCAAACCG 11403131 Query 4199 TGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCAT----CATCTAAA 4254 |||| |||||| |||||||||||| || || |||||| ||| |||| || | | | Sbjct 11403130 TGTCCACTTTAGCTGCTAATTCTGGTTGCTCAGTAAGTGCTAAGGCATCACCCACCCAGA 11403071 Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314 || || | || ||| |||||| || | | |||| | ||| | || |||| | Sbjct 11403070 CT-TTGGGCAAGAAAAGAGCTCCTTGCACAGGTTCCTGGAATTCTCTACTTAGAA----A 11403016 Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATT-GAGAACCAAGTCTTTTTACC 4373 | | |||| | ||| || | | ||| |||||||||| |||| || ||||| |||| Sbjct 11403015 TATACTCTGTCCTTTGAA-GATAGATCTCCTCAGGAATTGGAGAGTCAGGTCTTCCTACC 11402957 Query 4374 CATAATCACTAAATTCTGTTTATC 4397 |||| ||||| ||||||| Sbjct 11402956 TGTAATGGGCAAATTTCGTTTATC 11402933 >seq3142 Length=81131790 Score = 102 bits (112), Expect = 6e-17 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | || || || |||||||||||| |||| ||||| || |||||||||| Sbjct 22755141 CTTGAGTTCTCTACTTAGTACTACATTAATTCTGTCTTTCAAAGGTCGACTCTTCTCAGG 22755082 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 || |||||||| ||||| ||||||| ||||| | |||||||||| || Sbjct 22755081 AAGGGAGAACCAGGTCTTCCTACCCATGATCACCAGATTCTGTTTACCT 22755033 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 4061 TGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCC 4120 ||||||||| | ||| | |||||| ||||| ||||||| |||||| || |||||||| | Sbjct 22758947 TGTATTTCTTCAAATCGATTTCTGGGAAAAATGTGTCACTTTCAAATTCCTGCATGATTC 22758888 Query 4121 TAGTCACAAACAGTTT 4136 | |||||||||||||| Sbjct 22758887 TTGTCACAAACAGTTT 22758872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361237357757144