Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq3130 109 4e-19
seq3142 102 6e-17
>seq3130
Length=48363610
Score = 109 bits (120), Expect = 4e-19
Identities = 291/444 (66%), Gaps = 38/444 (9%)
Strand=Plus/Minus
Query 3967 TATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACA 4026
|| |||| || ||| ||||||| || || ||||| ||| | |||||||| || |
Sbjct 11403351 TAGTAATCATCCTTTTCATATAGTTGAAGCTTGTATTTACTGCTTTTCTCCTCCTAGGTC 11403292
Query 4027 TTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGA 4086
| |||||| |||| ||| ||||||| ||| ||| | ||||
Sbjct 11403291 TCAGAAAGCACACCTGGGTATTCTAGTAAA------------------TCAGCTGCTGGG 11403250
Query 4087 AAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCAT 4146
|||| |||||| ||||| || | | |||| |||||||| || || |||| || |
Sbjct 11403249 GAAAATGTGTCATTATCAAATTCCTACGCGATCTGTGTCACAAATAGCTTGAGATGGCCT 11403190
Query 4147 GGATAACTCATAGCTTCTTTATACACAGAACTA--------CCTCCAATTATCCAGACCA 4198
|| || | | |||| |||| ||||||||| ||||| | ||||| |||
Sbjct 11403189 GGCCAAGTTACGGCTTTGGTATAAACAGAACTATCATGCCCCCTCCCCT-ATCCAAACCG 11403131
Query 4199 TGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCAT----CATCTAAA 4254
|||| |||||| |||||||||||| || || |||||| ||| |||| || | | |
Sbjct 11403130 TGTCCACTTTAGCTGCTAATTCTGGTTGCTCAGTAAGTGCTAAGGCATCACCCACCCAGA 11403071
Query 4255 CTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACA 4314
|| || | || ||| |||||| || | | |||| | ||| | || |||| |
Sbjct 11403070 CT-TTGGGCAAGAAAAGAGCTCCTTGCACAGGTTCCTGGAATTCTCTACTTAGAA----A 11403016
Query 4315 TTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATT-GAGAACCAAGTCTTTTTACC 4373
| | |||| | ||| || | | ||| |||||||||| |||| || ||||| ||||
Sbjct 11403015 TATACTCTGTCCTTTGAA-GATAGATCTCCTCAGGAATTGGAGAGTCAGGTCTTCCTACC 11402957
Query 4374 CATAATCACTAAATTCTGTTTATC 4397
|||| ||||| |||||||
Sbjct 11402956 TGTAATGGGCAAATTTCGTTTATC 11402933
>seq3142
Length=81131790
Score = 102 bits (112), Expect = 6e-17
Identities = 88/109 (81%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| ||||| | || || || |||||||||||| |||| ||||| || ||||||||||
Sbjct 22755141 CTTGAGTTCTCTACTTAGTACTACATTAATTCTGTCTTTCAAAGGTCGACTCTTCTCAGG 22755082
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398
|| |||||||| ||||| ||||||| ||||| | |||||||||| ||
Sbjct 22755081 AAGGGAGAACCAGGTCTTCCTACCCATGATCACCAGATTCTGTTTACCT 22755033
Score = 84.2 bits (92), Expect = 2e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 4061 TGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCC 4120
||||||||| | ||| | |||||| ||||| ||||||| |||||| || |||||||| |
Sbjct 22758947 TGTATTTCTTCAAATCGATTTCTGGGAAAAATGTGTCACTTTCAAATTCCTGCATGATTC 22758888
Query 4121 TAGTCACAAACAGTTT 4136
| ||||||||||||||
Sbjct 22758887 TTGTCACAAACAGTTT 22758872
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361237357757144
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |