Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 356 3e-93
seq3040 136 5e-27
seq3140 109 7e-19
seq3018 102 1e-16
>seq3106
Length=22756556
Score = 356 bits (394), Expect = 3e-93
Identities = 616/892 (69%), Gaps = 10/892 (1%)
Strand=Plus/Minus
Query 23829 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 23888
|||||||||||||| | || || || || || | || || || || || || || |||
Sbjct 217572 GACATAACTCCCATCCTCTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCT 217513
Query 23889 TCTAATGATATATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAAT 23948
|||| || ||||| |||||||| || ||||||| || | | | | | |||
Sbjct 217512 TCTAGAGAAATATTCTCCATGAAGTCAAATGGATTTTCCACTTGAAAAACCTTGCCAAAG 217453
Query 23949 CCCAATTCAGAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAA 24008
|||| || || | || || || || ||||| || || ||||| | || ||
Sbjct 217452 CCCAGCTCTAGCATGAGCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAG 217393
Query 24009 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 24068
||||| || || || || ||||| | ||| | || || || || || || || |||
Sbjct 217392 TTCATGCCAATCAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACG 217333
Query 24069 GCGTCTGTTATAATAGATCTTACTGTTTCTTCACTC--GGTGGATACAATAAATGTTTAA 24126
|||| ||||| || | | ||| | || ||| || || | || || |
Sbjct 217332 GCGTTGACGATAATC--TCCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTTGA 217275
Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186
|||||| || ||||| || ||||| || ||||| ||||| || || | ||| |||||||
Sbjct 217274 ACATCAGGCAGGCGAAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAA 217215
Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 24246
| ||||| |||||||| || || || || || ||||| || || |||||||| || ||||
Sbjct 217214 AGGTGAGGCCGGGCATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAG 217155
Query 24247 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGC--- 24303
|||| || || ||||| || || |||||||| | | | ||| |||||| |||
Sbjct 217154 AAAAAAAGATGCCTTCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTT 217095
Query 24304 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363
|||| ||||| ||||| || | |||||| ||||| ||||| ||||| |
Sbjct 217094 TGTCCCCAATCCAGCGCAAGGCCCAGTCCGACTTCTTC---ACACAGGGCATGGTCTCGA 217038
Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 24423
| ||||| ||||| | | |||| | |||||| | ||| ||||| || | ||||
Sbjct 217037 TGGCATTGAAGAGGAACTCCCTTTCTCTGGAATCTTTGATATAAGTATCGATGAGGAGAC 216978
Query 24424 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 24483
| |||||||| |||||||||||||| ||||| || || || ||||||||||| | |||||
Sbjct 216977 TGTACATTTCAGAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCT 216918
Query 24484 CGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 24543
| || || || |||||| | || || || | ||||| ||||| ||||| || || |
Sbjct 216917 CTGTGATTTGAACTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGC 216858
Query 24544 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTAT 24603
|||| ||||| || |||| || ||| |||||| ||| | || || || | || |
Sbjct 216857 TGGCGGCAAAGAAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTT 216798
Query 24604 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 24663
||| | | || ||||| || | |||||| || || | |||||||| || ||||| |
Sbjct 216797 CCCAGTGCTGAATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGG 216738
Query 24664 CCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715
| || |||||||| | ||| |||||||| |||| || || || || |||||
Sbjct 216737 CTTTCTTATACATCTGCCAAATGTCATGGTATTCGATAGGGAAGATGACAAA 216686
>seq3040
Length=4637412
Score = 136 bits (150), Expect = 5e-27
Identities = 113/138 (82%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208
||| ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| |
Sbjct 3956951 TACCTGAAATTCTCCTGACAAGACTCTTCGAGTGTAGATGTTACTGGTATAAGGTTCAAT 3956892
Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268
||||||||||| ||||| || ||||||||||| ||||| ||||| || || | | |||
Sbjct 3956891 GGACTCATTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAA 3956832
Query 53269 ACTATTTCTAAGACCGTA 53286
||| ||||| | ||| ||
Sbjct 3956831 ACTGTTTCTTACACCATA 3956814
Score = 100 bits (110), Expect = 3e-16
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084
|| |||||||||||| |||||||| ||||||||||| || | || ||||| |||| |
Sbjct 3941771 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGATCCCTGGCACG 3941712
Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144
|| || || |||||||||||||| || | ||| || ||| | | || || |||||||
Sbjct 3941711 CTGCTCTTCCTTTCCTGTATTCTTCTTTAAATCAAGAAACTCAAAGATGTCTAAATGCCA 3941652
Query 54145 CGGTTCCAAGTATAT 54159
|| |||| ||| ||
Sbjct 3941651 AGGCTCCAGGTAAAT 3941637
Score = 93.3 bits (102), Expect = 5e-14
Identities = 120/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Minus
Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827
|||| || | ||| |||||||||||||| | || || || || || || || || | ||
Sbjct 3931312 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCCGCCAAAA 3931253
Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887
||||||| || || || | ||||| | || || ||| |||| || | || ||| ||||
Sbjct 3931252 TGGCATAGTCGGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCCA 3931193
Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933
||| || || || || ||| | |||| || ||||| || |||||
Sbjct 3931192 GTTCCACTGTGGTGACCCCACTGTATAAGCCCTGGATTACTTTCAT 3931147
>seq3140
Length=75551126
Score = 109 bits (120), Expect = 7e-19
Identities = 321/492 (65%), Gaps = 16/492 (3%)
Strand=Plus/Plus
Query 52843 TAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAG 52902
|| ||| ||||| || || || | ||| || ||| || || |||||||| | ||
Sbjct 7457067 TAAATAATACATCCCAGTCTTCAAACCCAGCTTCCCGCCACCAAGGTGCATACTGATAAG 7457126
Query 52903 TTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGC 52962
||| ||| | | || |||||||| |||| ||| || |||||||| ||||| |
Sbjct 7457127 CTTGCCATAGATAGACTCAATGATATGGATGTTCACAGACTGGCTTTGATCAATGAAAGA 7457186
Query 52963 TCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA 53022
|| || || || |||| || | | || | || | |||||||| | | |||||
Sbjct 7457187 ACCTCTATCAGCCACCATCTTGAGAACAGTTTCCTGAGAGATTTCCCATACCATCTTATA 7457246
Query 53023 AACTCGCTTAATATCTTCTGGAAGGTTT-GTAT--TCTGAATAGATCCACCATCTACCAT 53079
|| |||| | ||| || |||| | | ||| |||| |||| ||| || | ||
Sbjct 7457247 AAGCTGCTTCAGATCATCAGGAATTTCTAGTACACTCTGTGTAGAGCCATTGCCTGCAAT 7457306
Query 53080 AATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATG 53139
|||| ||| || || || ||||||||||| || ||| || | | | | | ||
Sbjct 7457307 AATCTGATTTTTCATTTCTTCATTCCATAA-CCTCACTCAGTAAGATGTTTCCATAAGTG 7457365
Query 53140 CGGATTAACTACTTGAAATTCTCCAGACAATACTCTCC---GAGTGTAAATATTACTGGT 53196
||||| || || ||| ||||||| ||||| ||||| | ||||||| || || |||||
Sbjct 7457366 AGGATTTACAACCTGACATTCTCCTGACAAGACTCTTCTTTGAGTGTAGATGTTGCTGGT 7457425
Query 53197 ATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 53256
| | ||||| ||||| |||| | ||||| | ||| ||||| ||||| ||
Sbjct 7457426 ACAAGGTTCAGTGGACTCGTTAT---------TCTGAGCCGCTGAAGCAGTAGGCATTGG 7457476
Query 53257 TGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCA 53316
|| | | |||| | |||| | || || || || || || || | | ||| |||
Sbjct 7457477 GGCAATAAGTAAATTGCTTCTTATGCCATACTTTGCAATCTTCTCCTTGACAAGTTTCCA 7457536
Query 53317 ATTCCAAAGATC 53328
| ||| || ||
Sbjct 7457537 GTCCCACAGGTC 7457548
>seq3018
Length=3443724
Score = 102 bits (112), Expect = 1e-16
Identities = 86/106 (81%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454
|||||| | ||| ||||| || | ||||| |||||||| |||||||||||||| |||||
Sbjct 3378004 ATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGTTTTCCATGGC 3378063
Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500
|| || || ||||||||||| | |||||| || || || ||||||
Sbjct 3378064 GATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTCT 3378109
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593698266741120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |