Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq3136 217 2e-51 seq3129 187 3e-42 seq3131 132 6e-26 >seq3136 Length=61004451 Score = 217 bits (240), Expect = 2e-51 Identities = 544/811 (67%), Gaps = 18/811 (2%) Strand=Plus/Plus Query 9549 GAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATT 9608 |||| |||||| | | || ||||| | ||| | |||||||| || |||||| |||| || Sbjct 47104570 GAAGCTCAAAATCATGACCAACATTTACCTGCTCAACTTGGCCATTTCTGACCTGCTCTT 47104629 Query 9609 TCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGG 9668 || || || | || || |||| ||||| || | || | || | ||| ||||| Sbjct 47104630 CCTCTTCACGCTTCCCTTCTGGACTTACTATGTTC-ACTGGAACAAG--TGGGTGTTTGG 47104686 Query 9669 TATTTCCCTGTGTAAACTG--CTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTC 9726 | | ||||||| | ||||||| | | ||| || ||| |||| || || Sbjct 47104687 CCACTTCATGTGTAAGATCATCTCAGGGCTCTAC--TACGTGGGCTTGTTCAGCGAGATC 47104744 Query 9727 TTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCT 9786 || | |||||||||||| || | ||||||||||| || |||| |||| || || Sbjct 47104745 TTCTTCATCATCCTGCTGACCATTGACAGGTATCTGGCCATTGTTCATGCCGTGTTCGCC 47104804 Query 9787 TTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCA 9846 || | | || ||||| | ||| || | ||| |||| |||||| ||||||| Sbjct 47104805 CTGCGAACCCGTACTGTAACTTTTGGTATCATAACCAGTGTCATCACCTGGGTTCTGGCG 47104864 Query 9847 GGGTT-GTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATG--GTAGG 9903 | | | | || | ||||||||||| | ||| |||| || | || || || Sbjct 47104865 GTGCTAGCTG-CGCTCCCTGAATTCATGTTTTATGGGACTCAGGGGCACTTTGAAGTCTT 47104923 Query 9904 GTTCAGTGTGATCCTTACTACCCAGAGATGTCTACAAATGTTTGGAGGCGCGCCCACGTT 9963 ||| |||| ||||| |||||||||| | | | |||| ||| ||| | | Sbjct 47104924 ATTC--TGTGGTCCTTCTTACCCAGAGAAGAAAGAACACCACTGGAAGCGTTTCCAAGCT 47104981 Query 9964 GCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTAT 10023 | | ||| || || | || | ||||||||||||||| |||||||| Sbjct 47104982 CTCAGGATGAACATTTTTGGCCTGGCACTCCCTCTGCTCATTATGATCATCTGCTACACA 47105041 Query 10024 GTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTC 10083 | ||| || | | ||| |||| | ||||| || || ||||||||||||||| | ||| Sbjct 47105042 GGAATCATTAAGACCCTGCTGAGATGTCCCAGTAAAAAAAAGTACAAGGCCATCCGACTC 47105101 Query 10084 ATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTA 10143 || |||||||| ||||||| || |||||| || |||||||| |||||| | | ||||| Sbjct 47105102 ATTTTTGTCATTATGGTGGTCTTTTTTGTGTTCTGGACACCTTACAACCTGCTCCTCCTT 47105161 Query 10144 CTGTCTACCTTTCACGCAACCCTTCTTAACCTGCAGTGTGCATTGAGCAGTAACTTGGAC 10203 | ||| ||||| | | ||||| | || | |||| ||||| | ||||| Sbjct 47105162 TTCTCTGCCTTTGA-TCTGTCCTTCCT-GGATG-ACTGTGAGCGGAGCAAACAGCTGGAC 47105218 Query 10204 ATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATC 10263 ||||| || | ||| | | ||| |||| ||||| ||||||||||| | ||| Sbjct 47105219 ATGGCCAAGCACGTGACAGAGGTGATCGCCCACACCCACTGCTGCATCAACCCCATCATC 47105278 Query 10264 TACGCGTTCGTGGGGGAGAAGTT-TAGAAGACACCTGTACCACTTCTTCCACACCTACGT 10322 ||||| ||||||||||||| ||| ||||| ||||| ||||||||| |||| | || Sbjct 47105279 TACGCCTTCGTGGGGGAGAGGTTCCAGAAG-TACCTGCGCCACTTCTTGCACAGGAATGT 47105337 Query 10323 GGCCATCTACCTCTGCAAGTACATCCCCTTC 10353 | |||| || | |||| ||||| |||||| Sbjct 47105338 GACCATGCACTTGAGCAAATACATTCCCTTC 47105368 Score = 217 bits (240), Expect = 2e-51 Identities = 544/811 (67%), Gaps = 18/811 (2%) Strand=Plus/Plus Query 176435 GAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATT 176494 |||| |||||| | | || ||||| | ||| | |||||||| || |||||| |||| || Sbjct 47104570 GAAGCTCAAAATCATGACCAACATTTACCTGCTCAACTTGGCCATTTCTGACCTGCTCTT 47104629 Query 176495 TCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGG 176554 || || || | || || |||| ||||| || | || | || | ||| ||||| Sbjct 47104630 CCTCTTCACGCTTCCCTTCTGGACTTACTATGTTC-ACTGGAACAAG--TGGGTGTTTGG 47104686 Query 176555 TATTTCCCTGTGTAAACTG--CTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTC 176612 | | ||||||| | ||||||| | | ||| || ||| |||| || || Sbjct 47104687 CCACTTCATGTGTAAGATCATCTCAGGGCTCTAC--TACGTGGGCTTGTTCAGCGAGATC 47104744 Query 176613 TTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCT 176672 || | |||||||||||| || | ||||||||||| || |||| |||| || || Sbjct 47104745 TTCTTCATCATCCTGCTGACCATTGACAGGTATCTGGCCATTGTTCATGCCGTGTTCGCC 47104804 Query 176673 TTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCA 176732 || | | || ||||| | ||| || | ||| |||| |||||| ||||||| Sbjct 47104805 CTGCGAACCCGTACTGTAACTTTTGGTATCATAACCAGTGTCATCACCTGGGTTCTGGCG 47104864 Query 176733 GGGTT-GTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATG--GTAGG 176789 | | | | || | ||||||||||| | ||| |||| || | || || || Sbjct 47104865 GTGCTAGCTG-CGCTCCCTGAATTCATGTTTTATGGGACTCAGGGGCACTTTGAAGTCTT 47104923 Query 176790 GTTCAGTGTGATCCTTACTACCCAGAGATGTCTACAAATGTTTGGAGGCGCGCCCACGTT 176849 ||| |||| ||||| |||||||||| | | | |||| ||| ||| | | Sbjct 47104924 ATTC--TGTGGTCCTTCTTACCCAGAGAAGAAAGAACACCACTGGAAGCGTTTCCAAGCT 47104981 Query 176850 GCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTAT 176909 | | ||| || || | || | ||||||||||||||| |||||||| Sbjct 47104982 CTCAGGATGAACATTTTTGGCCTGGCACTCCCTCTGCTCATTATGATCATCTGCTACACA 47105041 Query 176910 GTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTC 176969 | ||| || | | ||| |||| | ||||| || || ||||||||||||||| | ||| Sbjct 47105042 GGAATCATTAAGACCCTGCTGAGATGTCCCAGTAAAAAAAAGTACAAGGCCATCCGACTC 47105101 Query 176970 ATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTA 177029 || |||||||| ||||||| || |||||| || |||||||| |||||| | | ||||| Sbjct 47105102 ATTTTTGTCATTATGGTGGTCTTTTTTGTGTTCTGGACACCTTACAACCTGCTCCTCCTT 47105161 Query 177030 CTGTCTACCTTTCACGCAACCCTTCTTAACCTGCAGTGTGCATTGAGCAGTAACTTGGAC 177089 | ||| ||||| | | ||||| | || | |||| ||||| | ||||| Sbjct 47105162 TTCTCTGCCTTTGA-TCTGTCCTTCCT-GGATG-ACTGTGAGCGGAGCAAACAGCTGGAC 47105218 Query 177090 ATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATC 177149 ||||| || | ||| | | ||| |||| ||||| ||||||||||| | ||| Sbjct 47105219 ATGGCCAAGCACGTGACAGAGGTGATCGCCCACACCCACTGCTGCATCAACCCCATCATC 47105278 Query 177150 TACGCGTTCGTGGGGGAGAAGTT-TAGAAGACACCTGTACCACTTCTTCCACACCTACGT 177208 ||||| ||||||||||||| ||| ||||| ||||| ||||||||| |||| | || Sbjct 47105279 TACGCCTTCGTGGGGGAGAGGTTCCAGAAG-TACCTGCGCCACTTCTTGCACAGGAATGT 47105337 Query 177209 GGCCATCTACCTCTGCAAGTACATCCCCTTC 177239 | |||| || | |||| ||||| |||||| Sbjct 47105338 GACCATGCACTTGAGCAAATACATTCCCTTC 47105368 Score = 109 bits (120), Expect = 6e-19 Identities = 237/352 (67%), Gaps = 6/352 (2%) Strand=Plus/Minus Query 176872 TCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGA 176931 |||| ||||||||||| | |||| |||||||| | || ||||| | |||| Sbjct 47047215 TCATGTTGCCTCTGCTGGTCATGGTGTTCTGCTACACAGGCATCATCAGCATCCTGTGTC 47047156 Query 176932 GGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCT 176991 | || |||| | |||||||| ||| ||| || | || ||||| | ||||||| | || Sbjct 47047155 GCCGGCCCAACGAGAAGAAGGTCAAAGCCGTCCGACTGATCTTCGCCATCATGATCATCT 47047096 Query 176992 ATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCC 177051 |||| | || ||||| || |||||| | | | | | | ||| ||||| | | | | Sbjct 47047095 TTTTTCTCTTCTGGACCCCATACAACCTGGCTGTGTTTGTTTCT-GCTTTCCAGGAGCAC 47047037 Query 177052 TTCTTAAC---CTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAA 177108 | || || || | | | ||| |||||| | ||| |||| |||| | ||||| Sbjct 47047036 ATGTTCACCAACTTCTGCGAGCA--GAGCAGGCAGCTGGCTGTGGCCCTGCAGGTAACAC 47046979 Query 177109 AAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGA 177168 | | | |||||||| ||||| || ||||||| || ||||| | || ||||| |||| Sbjct 47046978 AGATGATTGCCTACACTCACTGCTGTGTCAACCCGGTCATCTATGTCTTTGTGGGTGAGA 47046919 Query 177169 AGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCT 177220 ||||| | | ||||| || ||||||| | | |||||| ||||| Sbjct 47046918 AGTTTCGGAAGTACCTGCGTCAACTCTTCCAGTGGCATGGGGCCATGTACCT 47046867 Score = 109 bits (120), Expect = 6e-19 Identities = 237/352 (67%), Gaps = 6/352 (2%) Strand=Plus/Minus Query 9986 TCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGA 10045 |||| ||||||||||| | |||| |||||||| | || ||||| | |||| Sbjct 47047215 TCATGTTGCCTCTGCTGGTCATGGTGTTCTGCTACACAGGCATCATCAGCATCCTGTGTC 47047156 Query 10046 GGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCT 10105 | || |||| | |||||||| ||| ||| || | || ||||| | ||||||| | || Sbjct 47047155 GCCGGCCCAACGAGAAGAAGGTCAAAGCCGTCCGACTGATCTTCGCCATCATGATCATCT 47047096 Query 10106 ATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCC 10165 |||| | || ||||| || |||||| | | | | | | ||| ||||| | | | | Sbjct 47047095 TTTTTCTCTTCTGGACCCCATACAACCTGGCTGTGTTTGTTTCT-GCTTTCCAGGAGCAC 47047037 Query 10166 TTCTTAAC---CTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAA 10222 | || || || | | | ||| |||||| | ||| |||| |||| | ||||| Sbjct 47047036 ATGTTCACCAACTTCTGCGAGCA--GAGCAGGCAGCTGGCTGTGGCCCTGCAGGTAACAC 47046979 Query 10223 AAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGA 10282 | | | |||||||| ||||| || ||||||| || ||||| | || ||||| |||| Sbjct 47046978 AGATGATTGCCTACACTCACTGCTGTGTCAACCCGGTCATCTATGTCTTTGTGGGTGAGA 47046919 Query 10283 AGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCT 10334 ||||| | | ||||| || ||||||| | | |||||| ||||| Sbjct 47046918 AGTTTCGGAAGTACCTGCGTCAACTCTTCCAGTGGCATGGGGCCATGTACCT 47046867 >seq3129 Length=43247874 Score = 187 bits (206), Expect = 3e-42 Identities = 138/161 (86%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 |||||||||| ||| || | ||||||||| ||||||| ||||||||| |||||||||||| Sbjct 41738265 AGGCCCGTGACGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 41738206 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || ||||| ||||||||||| ||||||||||||||||| ||||| | |||||| | || Sbjct 41738205 ACGCCCAGGCCCATGTCCCCAGAGCGCTGGTACAGCTGACAGGACAATTCCCCGTTCACC 41738146 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 |||||||||||||| ||| ||| ||||| ||||| ||||| Sbjct 41738145 ACGTAGAACTGGCAGAGGGTGTGACAGGGAGGCAGCGCCAT 41738105 >seq3131 Length=50742376 Score = 132 bits (146), Expect = 6e-26 Identities = 124/157 (79%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||| | ||||| || ||||||||| || |||||||||||||||||| | || | ||| Sbjct 16184038 CAGCGTCGCAGCCGCAGCCTGAGGGTCTTCAGCTTTTCCCCCAGGGAGCTTACATGTTCC 16183979 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || ||| | | || || || |||| ||||||||||||| | || ||||||||| Sbjct 16183978 TTGAT---GTCTGGGTCATGATTTTCTGCCTTGGGCATCACCTCCACTAGATAAAACTGG 16183922 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 |||||||| |||| ||| ||||| ||||||||||||| Sbjct 16183921 ATCATCTCTGACAAGGCTTGGCAACCCAGGTAACCCT 16183885 Score = 105 bits (116), Expect = 8e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 137941 GTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTCGCTCATGGCCTTGTAGACC 138000 ||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||| Sbjct 16186074 GTCATGTAGGCTTCTATGTAGTTGATGAAGATGTCAAACTCACTCATGGCTTTGTAGACG 16186015 Query 138001 CCTTTTTCCTGGAGCT 138016 ||||| || ||||||| Sbjct 16186014 CCTTTCTCTTGGAGCT 16185999 Score = 89.7 bits (98), Expect = 6e-13 Identities = 125/170 (74%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 138297 AAAGAAGGTCTTTACCCTGCTGAAGGCGGCCCTGAGCTCGTGGAGCATGTGGGGCAGGCT 138356 |||||| ||||| ||||||| ||||| || | |||||| | |||||||||||||||| Sbjct 16182709 AAAGAAAGTCTTCACCCTGCCAAAGGCAGCTCGGAGCTCTCGAAGCATGTGGGGCAGGCC 16182650 Query 138357 GG-TGGGCAATGTAGGGCAGTCGTCCCCAGACTCACTG-TCATATTTGTTGTCGGCCCAC 138414 || |||| | || | ||| |||| |||||| || || | | | | |||| Sbjct 16182649 GGCTGGGAAGTG-GGCACAGCTGTCCTCAGACTGGGTGTTCGTGCCT-TGGCTGGCCTTG 16182592 Query 138415 ACCCCGGCCAGGAGAACCAGGCAACACAGCAGCGATGCCCTGAACATGGC 138464 ||||||||||| | ||||||||||| ||||||| || ||| |||||| Sbjct 16182591 ACCCCGGCCAGTAAGACCAGGCAACATAGCAGCGCTGAGCTGGGCATGGC 16182542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590053609981760