Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq3136 217 2e-51
seq3129 187 3e-42
seq3131 132 6e-26
>seq3136
Length=61004451
Score = 217 bits (240), Expect = 2e-51
Identities = 544/811 (67%), Gaps = 18/811 (2%)
Strand=Plus/Plus
Query 9549 GAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATT 9608
|||| |||||| | | || ||||| | ||| | |||||||| || |||||| |||| ||
Sbjct 47104570 GAAGCTCAAAATCATGACCAACATTTACCTGCTCAACTTGGCCATTTCTGACCTGCTCTT 47104629
Query 9609 TCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGG 9668
|| || || | || || |||| ||||| || | || | || | ||| |||||
Sbjct 47104630 CCTCTTCACGCTTCCCTTCTGGACTTACTATGTTC-ACTGGAACAAG--TGGGTGTTTGG 47104686
Query 9669 TATTTCCCTGTGTAAACTG--CTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTC 9726
| | ||||||| | ||||||| | | ||| || ||| |||| || ||
Sbjct 47104687 CCACTTCATGTGTAAGATCATCTCAGGGCTCTAC--TACGTGGGCTTGTTCAGCGAGATC 47104744
Query 9727 TTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCT 9786
|| | |||||||||||| || | ||||||||||| || |||| |||| || ||
Sbjct 47104745 TTCTTCATCATCCTGCTGACCATTGACAGGTATCTGGCCATTGTTCATGCCGTGTTCGCC 47104804
Query 9787 TTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCA 9846
|| | | || ||||| | ||| || | ||| |||| |||||| |||||||
Sbjct 47104805 CTGCGAACCCGTACTGTAACTTTTGGTATCATAACCAGTGTCATCACCTGGGTTCTGGCG 47104864
Query 9847 GGGTT-GTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATG--GTAGG 9903
| | | | || | ||||||||||| | ||| |||| || | || || ||
Sbjct 47104865 GTGCTAGCTG-CGCTCCCTGAATTCATGTTTTATGGGACTCAGGGGCACTTTGAAGTCTT 47104923
Query 9904 GTTCAGTGTGATCCTTACTACCCAGAGATGTCTACAAATGTTTGGAGGCGCGCCCACGTT 9963
||| |||| ||||| |||||||||| | | | |||| ||| ||| | |
Sbjct 47104924 ATTC--TGTGGTCCTTCTTACCCAGAGAAGAAAGAACACCACTGGAAGCGTTTCCAAGCT 47104981
Query 9964 GCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTAT 10023
| | ||| || || | || | ||||||||||||||| ||||||||
Sbjct 47104982 CTCAGGATGAACATTTTTGGCCTGGCACTCCCTCTGCTCATTATGATCATCTGCTACACA 47105041
Query 10024 GTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTC 10083
| ||| || | | ||| |||| | ||||| || || ||||||||||||||| | |||
Sbjct 47105042 GGAATCATTAAGACCCTGCTGAGATGTCCCAGTAAAAAAAAGTACAAGGCCATCCGACTC 47105101
Query 10084 ATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTA 10143
|| |||||||| ||||||| || |||||| || |||||||| |||||| | | |||||
Sbjct 47105102 ATTTTTGTCATTATGGTGGTCTTTTTTGTGTTCTGGACACCTTACAACCTGCTCCTCCTT 47105161
Query 10144 CTGTCTACCTTTCACGCAACCCTTCTTAACCTGCAGTGTGCATTGAGCAGTAACTTGGAC 10203
| ||| ||||| | | ||||| | || | |||| ||||| | |||||
Sbjct 47105162 TTCTCTGCCTTTGA-TCTGTCCTTCCT-GGATG-ACTGTGAGCGGAGCAAACAGCTGGAC 47105218
Query 10204 ATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATC 10263
||||| || | ||| | | ||| |||| ||||| ||||||||||| | |||
Sbjct 47105219 ATGGCCAAGCACGTGACAGAGGTGATCGCCCACACCCACTGCTGCATCAACCCCATCATC 47105278
Query 10264 TACGCGTTCGTGGGGGAGAAGTT-TAGAAGACACCTGTACCACTTCTTCCACACCTACGT 10322
||||| ||||||||||||| ||| ||||| ||||| ||||||||| |||| | ||
Sbjct 47105279 TACGCCTTCGTGGGGGAGAGGTTCCAGAAG-TACCTGCGCCACTTCTTGCACAGGAATGT 47105337
Query 10323 GGCCATCTACCTCTGCAAGTACATCCCCTTC 10353
| |||| || | |||| ||||| ||||||
Sbjct 47105338 GACCATGCACTTGAGCAAATACATTCCCTTC 47105368
Score = 217 bits (240), Expect = 2e-51
Identities = 544/811 (67%), Gaps = 18/811 (2%)
Strand=Plus/Plus
Query 176435 GAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATT 176494
|||| |||||| | | || ||||| | ||| | |||||||| || |||||| |||| ||
Sbjct 47104570 GAAGCTCAAAATCATGACCAACATTTACCTGCTCAACTTGGCCATTTCTGACCTGCTCTT 47104629
Query 176495 TCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGG 176554
|| || || | || || |||| ||||| || | || | || | ||| |||||
Sbjct 47104630 CCTCTTCACGCTTCCCTTCTGGACTTACTATGTTC-ACTGGAACAAG--TGGGTGTTTGG 47104686
Query 176555 TATTTCCCTGTGTAAACTG--CTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTC 176612
| | ||||||| | ||||||| | | ||| || ||| |||| || ||
Sbjct 47104687 CCACTTCATGTGTAAGATCATCTCAGGGCTCTAC--TACGTGGGCTTGTTCAGCGAGATC 47104744
Query 176613 TTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCT 176672
|| | |||||||||||| || | ||||||||||| || |||| |||| || ||
Sbjct 47104745 TTCTTCATCATCCTGCTGACCATTGACAGGTATCTGGCCATTGTTCATGCCGTGTTCGCC 47104804
Query 176673 TTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCA 176732
|| | | || ||||| | ||| || | ||| |||| |||||| |||||||
Sbjct 47104805 CTGCGAACCCGTACTGTAACTTTTGGTATCATAACCAGTGTCATCACCTGGGTTCTGGCG 47104864
Query 176733 GGGTT-GTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATG--GTAGG 176789
| | | | || | ||||||||||| | ||| |||| || | || || ||
Sbjct 47104865 GTGCTAGCTG-CGCTCCCTGAATTCATGTTTTATGGGACTCAGGGGCACTTTGAAGTCTT 47104923
Query 176790 GTTCAGTGTGATCCTTACTACCCAGAGATGTCTACAAATGTTTGGAGGCGCGCCCACGTT 176849
||| |||| ||||| |||||||||| | | | |||| ||| ||| | |
Sbjct 47104924 ATTC--TGTGGTCCTTCTTACCCAGAGAAGAAAGAACACCACTGGAAGCGTTTCCAAGCT 47104981
Query 176850 GCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTAT 176909
| | ||| || || | || | ||||||||||||||| ||||||||
Sbjct 47104982 CTCAGGATGAACATTTTTGGCCTGGCACTCCCTCTGCTCATTATGATCATCTGCTACACA 47105041
Query 176910 GTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTC 176969
| ||| || | | ||| |||| | ||||| || || ||||||||||||||| | |||
Sbjct 47105042 GGAATCATTAAGACCCTGCTGAGATGTCCCAGTAAAAAAAAGTACAAGGCCATCCGACTC 47105101
Query 176970 ATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTA 177029
|| |||||||| ||||||| || |||||| || |||||||| |||||| | | |||||
Sbjct 47105102 ATTTTTGTCATTATGGTGGTCTTTTTTGTGTTCTGGACACCTTACAACCTGCTCCTCCTT 47105161
Query 177030 CTGTCTACCTTTCACGCAACCCTTCTTAACCTGCAGTGTGCATTGAGCAGTAACTTGGAC 177089
| ||| ||||| | | ||||| | || | |||| ||||| | |||||
Sbjct 47105162 TTCTCTGCCTTTGA-TCTGTCCTTCCT-GGATG-ACTGTGAGCGGAGCAAACAGCTGGAC 47105218
Query 177090 ATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATC 177149
||||| || | ||| | | ||| |||| ||||| ||||||||||| | |||
Sbjct 47105219 ATGGCCAAGCACGTGACAGAGGTGATCGCCCACACCCACTGCTGCATCAACCCCATCATC 47105278
Query 177150 TACGCGTTCGTGGGGGAGAAGTT-TAGAAGACACCTGTACCACTTCTTCCACACCTACGT 177208
||||| ||||||||||||| ||| ||||| ||||| ||||||||| |||| | ||
Sbjct 47105279 TACGCCTTCGTGGGGGAGAGGTTCCAGAAG-TACCTGCGCCACTTCTTGCACAGGAATGT 47105337
Query 177209 GGCCATCTACCTCTGCAAGTACATCCCCTTC 177239
| |||| || | |||| ||||| ||||||
Sbjct 47105338 GACCATGCACTTGAGCAAATACATTCCCTTC 47105368
Score = 109 bits (120), Expect = 6e-19
Identities = 237/352 (67%), Gaps = 6/352 (2%)
Strand=Plus/Minus
Query 176872 TCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGA 176931
|||| ||||||||||| | |||| |||||||| | || ||||| | ||||
Sbjct 47047215 TCATGTTGCCTCTGCTGGTCATGGTGTTCTGCTACACAGGCATCATCAGCATCCTGTGTC 47047156
Query 176932 GGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCT 176991
| || |||| | |||||||| ||| ||| || | || ||||| | ||||||| | ||
Sbjct 47047155 GCCGGCCCAACGAGAAGAAGGTCAAAGCCGTCCGACTGATCTTCGCCATCATGATCATCT 47047096
Query 176992 ATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCC 177051
|||| | || ||||| || |||||| | | | | | | ||| ||||| | | | |
Sbjct 47047095 TTTTTCTCTTCTGGACCCCATACAACCTGGCTGTGTTTGTTTCT-GCTTTCCAGGAGCAC 47047037
Query 177052 TTCTTAAC---CTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAA 177108
| || || || | | | ||| |||||| | ||| |||| |||| | |||||
Sbjct 47047036 ATGTTCACCAACTTCTGCGAGCA--GAGCAGGCAGCTGGCTGTGGCCCTGCAGGTAACAC 47046979
Query 177109 AAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGA 177168
| | | |||||||| ||||| || ||||||| || ||||| | || ||||| ||||
Sbjct 47046978 AGATGATTGCCTACACTCACTGCTGTGTCAACCCGGTCATCTATGTCTTTGTGGGTGAGA 47046919
Query 177169 AGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCT 177220
||||| | | ||||| || ||||||| | | |||||| |||||
Sbjct 47046918 AGTTTCGGAAGTACCTGCGTCAACTCTTCCAGTGGCATGGGGCCATGTACCT 47046867
Score = 109 bits (120), Expect = 6e-19
Identities = 237/352 (67%), Gaps = 6/352 (2%)
Strand=Plus/Minus
Query 9986 TCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGA 10045
|||| ||||||||||| | |||| |||||||| | || ||||| | ||||
Sbjct 47047215 TCATGTTGCCTCTGCTGGTCATGGTGTTCTGCTACACAGGCATCATCAGCATCCTGTGTC 47047156
Query 10046 GGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCT 10105
| || |||| | |||||||| ||| ||| || | || ||||| | ||||||| | ||
Sbjct 47047155 GCCGGCCCAACGAGAAGAAGGTCAAAGCCGTCCGACTGATCTTCGCCATCATGATCATCT 47047096
Query 10106 ATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCC 10165
|||| | || ||||| || |||||| | | | | | | ||| ||||| | | | |
Sbjct 47047095 TTTTTCTCTTCTGGACCCCATACAACCTGGCTGTGTTTGTTTCT-GCTTTCCAGGAGCAC 47047037
Query 10166 TTCTTAAC---CTGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAA 10222
| || || || | | | ||| |||||| | ||| |||| |||| | |||||
Sbjct 47047036 ATGTTCACCAACTTCTGCGAGCA--GAGCAGGCAGCTGGCTGTGGCCCTGCAGGTAACAC 47046979
Query 10223 AAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGA 10282
| | | |||||||| ||||| || ||||||| || ||||| | || ||||| ||||
Sbjct 47046978 AGATGATTGCCTACACTCACTGCTGTGTCAACCCGGTCATCTATGTCTTTGTGGGTGAGA 47046919
Query 10283 AGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCT 10334
||||| | | ||||| || ||||||| | | |||||| |||||
Sbjct 47046918 AGTTTCGGAAGTACCTGCGTCAACTCTTCCAGTGGCATGGGGCCATGTACCT 47046867
>seq3129
Length=43247874
Score = 187 bits (206), Expect = 3e-42
Identities = 138/161 (86%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809
|||||||||| ||| || | ||||||||| ||||||| ||||||||| ||||||||||||
Sbjct 41738265 AGGCCCGTGACGTGCGCAATCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 41738206
Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869
|| ||||| ||||||||||| ||||||||||||||||| ||||| | |||||| | ||
Sbjct 41738205 ACGCCCAGGCCCATGTCCCCAGAGCGCTGGTACAGCTGACAGGACAATTCCCCGTTCACC 41738146
Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910
|||||||||||||| ||| ||| ||||| ||||| |||||
Sbjct 41738145 ACGTAGAACTGGCAGAGGGTGTGACAGGGAGGCAGCGCCAT 41738105
>seq3131
Length=50742376
Score = 132 bits (146), Expect = 6e-26
Identities = 124/157 (79%), Gaps = 3/157 (2%)
Strand=Plus/Minus
Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141
||||| | ||||| || ||||||||| || |||||||||||||||||| | || | |||
Sbjct 16184038 CAGCGTCGCAGCCGCAGCCTGAGGGTCTTCAGCTTTTCCCCCAGGGAGCTTACATGTTCC 16183979
Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201
|| ||| | | || || || |||| ||||||||||||| | || |||||||||
Sbjct 16183978 TTGAT---GTCTGGGTCATGATTTTCTGCCTTGGGCATCACCTCCACTAGATAAAACTGG 16183922
Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238
|||||||| |||| ||| ||||| |||||||||||||
Sbjct 16183921 ATCATCTCTGACAAGGCTTGGCAACCCAGGTAACCCT 16183885
Score = 105 bits (116), Expect = 8e-18
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 137941 GTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTCGCTCATGGCCTTGTAGACC 138000
||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 16186074 GTCATGTAGGCTTCTATGTAGTTGATGAAGATGTCAAACTCACTCATGGCTTTGTAGACG 16186015
Query 138001 CCTTTTTCCTGGAGCT 138016
||||| || |||||||
Sbjct 16186014 CCTTTCTCTTGGAGCT 16185999
Score = 89.7 bits (98), Expect = 6e-13
Identities = 125/170 (74%), Gaps = 4/170 (2%)
Strand=Plus/Minus
Query 138297 AAAGAAGGTCTTTACCCTGCTGAAGGCGGCCCTGAGCTCGTGGAGCATGTGGGGCAGGCT 138356
|||||| ||||| ||||||| ||||| || | |||||| | ||||||||||||||||
Sbjct 16182709 AAAGAAAGTCTTCACCCTGCCAAAGGCAGCTCGGAGCTCTCGAAGCATGTGGGGCAGGCC 16182650
Query 138357 GG-TGGGCAATGTAGGGCAGTCGTCCCCAGACTCACTG-TCATATTTGTTGTCGGCCCAC 138414
|| |||| | || | ||| |||| |||||| || || | | | | ||||
Sbjct 16182649 GGCTGGGAAGTG-GGCACAGCTGTCCTCAGACTGGGTGTTCGTGCCT-TGGCTGGCCTTG 16182592
Query 138415 ACCCCGGCCAGGAGAACCAGGCAACACAGCAGCGATGCCCTGAACATGGC 138464
||||||||||| | ||||||||||| ||||||| || ||| ||||||
Sbjct 16182591 ACCCCGGCCAGTAAGACCAGGCAACATAGCAGCGCTGAGCTGGGCATGGC 16182542
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590053609981760
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