Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq3135 260 2e-64 seq3080 123 3e-23 >seq3135 Length=60673567 Score = 260 bits (288), Expect = 2e-64 Identities = 260/337 (77%), Gaps = 0/337 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||| || |||||||| ||||| | | | | ||| | ||||| |||||||||||||| Sbjct 24435332 AGCAGAGCTTCGATGTCTGGCTCGATGTCGATGGTAGGAAAGCGGCGGCTGTACCTGCGC 24435391 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || || ||||| | ||||||| ||||||||| || ||||||| |||||| || ||| Sbjct 24435392 ACCGGAACACCGTCGGGGCCCACCAGGAACTTCTCAAAATTCCAGGACACGTCATTACGG 24435451 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 || || || |||||| |||| || |||||| ||| ||||| | ||||||||| Sbjct 24435452 CATACCGGGGACCAGATGATGAACTTAGGGTCGGTCATGAGCGCAATGGGGTCGTCGCTG 24435511 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||||||| ||||||||||| ||||||| |||||| |||||||| | ||||| || ||| Sbjct 24435512 GGCGCCGGGAGGGCCTCTCGGAGGAAGGTGAAGAGTGGATGTGCTTTCGCACCATTCACC 24435571 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||||||||| | ||||| || ||||| || || || ||||||| ||| Sbjct 24435572 TCGCACTTCTCGAAGAGAGTGAAGTTGGGTTCGAACCCACCACCGGGTCGGACGTACTTG 24435631 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 || ||| ||| ||||| | |||| |||||| |||| Sbjct 24435632 AGCGAATGCAGAATCTCTTCGTTCTTGGCGTTCTCCT 24435668 Score = 149 bits (164), Expect = 8e-31 Identities = 160/209 (77%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCA-GCCCCCGAGCTCCTAGG 83449 ||||||| ||||||||||| |||||||| || || || |||| |||| | || || ||| Sbjct 24435870 CCTGGTGTCCGAACTGGTTGCACGGGAAGCCGAGGACAACCAGGCCCTTGTGC-CCGAGG 24435928 Query 83450 CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCT 83509 ||| |||||| ||||||||||| ||| | |||||||||||| | ||||| ||||| || Sbjct 24435929 CGCGCCTGCAGATCGTTCATCTGGGTGAAGTCCCGGACCGTGGTGCCTCAAAGGGAGGCC 24435988 Query 83510 ACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCG 83569 || ||||| ||||||| ||| ||| || | | |||| || | | || || || ||| Sbjct 24435989 ACATTCTCAATGAGCAGCACCTTGCCTCGCAGGGAGCCGAAATTTAGCGGCTCCCCCCCG 24436048 Query 83570 GTAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | | |||||| || ||||||| ||| || Sbjct 24436049 GCCAGCGGGCGCGCGGAGAAGGAGTATAC 24436077 >seq3080 Length=10554711 Score = 123 bits (136), Expect = 3e-23 Identities = 190/266 (71%), Gaps = 4/266 (2%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| ||||||||| || ||| Sbjct 6887624 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCCCGCCTGC 6887566 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || ||||||||| | ||| | ||||||| Sbjct 6887565 TGGTGCACCTGTTCCCCGAGCTCTTCACCCACGAGAACCTGAGGAAGCAGTACAACTGCA 6887506 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || |||||| ||| | | || |||| ||||| Sbjct 6887505 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGGCTCGCATCAGGCTGATCCGCCACTAC 6887447 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 |||||| |||| |||| ||| ||||| |||||||||| ||||| ||| Sbjct 6887446 GTGCAGCTGCTCTACCCCCGGGCCAAGAACGACCGCGTGTGGACGCTGGAGTTCGTGGGC 6887387 Query 50648 TGCCTGGACGAGCGCTGCCGGCGCCG 50673 ||||||||||||||| ||||||| Sbjct 6887386 AAGCTGGACGAGCGCTGCAGGCGCCG 6887361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608772874285760