Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq3135 260 2e-64
seq3080 123 3e-23
>seq3135
Length=60673567
Score = 260 bits (288), Expect = 2e-64
Identities = 260/337 (77%), Gaps = 0/337 (0%)
Strand=Plus/Plus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
||||| || |||||||| ||||| | | | | ||| | ||||| ||||||||||||||
Sbjct 24435332 AGCAGAGCTTCGATGTCTGGCTCGATGTCGATGGTAGGAAAGCGGCGGCTGTACCTGCGC 24435391
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
|| || ||||| | ||||||| ||||||||| || ||||||| |||||| || |||
Sbjct 24435392 ACCGGAACACCGTCGGGGCCCACCAGGAACTTCTCAAAATTCCAGGACACGTCATTACGG 24435451
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
|| || || |||||| |||| || |||||| ||| ||||| | |||||||||
Sbjct 24435452 CATACCGGGGACCAGATGATGAACTTAGGGTCGGTCATGAGCGCAATGGGGTCGTCGCTG 24435511
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
|||||||| ||||||||||| ||||||| |||||| |||||||| | ||||| || |||
Sbjct 24435512 GGCGCCGGGAGGGCCTCTCGGAGGAAGGTGAAGAGTGGATGTGCTTTCGCACCATTCACC 24435571
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
||||||||||||||||| | ||||| || ||||| || || || ||||||| |||
Sbjct 24435572 TCGCACTTCTCGAAGAGAGTGAAGTTGGGTTCGAACCCACCACCGGGTCGGACGTACTTG 24435631
Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393
|| ||| ||| ||||| | |||| |||||| ||||
Sbjct 24435632 AGCGAATGCAGAATCTCTTCGTTCTTGGCGTTCTCCT 24435668
Score = 149 bits (164), Expect = 8e-31
Identities = 160/209 (77%), Gaps = 2/209 (1%)
Strand=Plus/Plus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCA-GCCCCCGAGCTCCTAGG 83449
||||||| ||||||||||| |||||||| || || || |||| |||| | || || |||
Sbjct 24435870 CCTGGTGTCCGAACTGGTTGCACGGGAAGCCGAGGACAACCAGGCCCTTGTGC-CCGAGG 24435928
Query 83450 CGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCT 83509
||| |||||| ||||||||||| ||| | |||||||||||| | ||||| ||||| ||
Sbjct 24435929 CGCGCCTGCAGATCGTTCATCTGGGTGAAGTCCCGGACCGTGGTGCCTCAAAGGGAGGCC 24435988
Query 83510 ACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCG 83569
|| ||||| ||||||| ||| ||| || | | |||| || | | || || || |||
Sbjct 24435989 ACATTCTCAATGAGCAGCACCTTGCCTCGCAGGGAGCCGAAATTTAGCGGCTCCCCCCCG 24436048
Query 83570 GTAATCGGGCGTGCTGAGAAGGCGTACAC 83598
| | |||||| || ||||||| ||| ||
Sbjct 24436049 GCCAGCGGGCGCGCGGAGAAGGAGTATAC 24436077
>seq3080
Length=10554711
Score = 123 bits (136), Expect = 3e-23
Identities = 190/266 (71%), Gaps = 4/266 (2%)
Strand=Plus/Minus
Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468
||| ||||||| || |||| | ||| || ||| ||| ||||||||| || |||
Sbjct 6887624 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCCCGCCTGC 6887566
Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528
| ||| || |||| || |||||||| || ||||||||| | ||| | |||||||
Sbjct 6887565 TGGTGCACCTGTTCCCCGAGCTCTTCACCCACGAGAACCTGAGGAAGCAGTACAACTGCA 6887506
Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587
||||||| |||||||| |||| || |||||| ||| | | || |||| |||||
Sbjct 6887505 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGGCTCGCATCAGGCTGATCCGCCACTAC 6887447
Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647
|||||| |||| |||| ||| ||||| |||||||||| ||||| |||
Sbjct 6887446 GTGCAGCTGCTCTACCCCCGGGCCAAGAACGACCGCGTGTGGACGCTGGAGTTCGTGGGC 6887387
Query 50648 TGCCTGGACGAGCGCTGCCGGCGCCG 50673
||||||||||||||| |||||||
Sbjct 6887386 AAGCTGGACGAGCGCTGCAGGCGCCG 6887361
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608772874285760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |