Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3106 412 4e-110 seq2965 185 9e-42 seq3082 145 8e-30 seq3143 123 3e-23 seq3135 113 5e-20 seq3126 91.5 2e-13 seq3109 91.5 2e-13 seq3018 89.7 5e-13 >seq3106 Length=22756556 Score = 412 bits (456), Expect = 4e-110 Identities = 577/803 (72%), Gaps = 11/803 (1%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || |||||| | ||||||||||| || || || || ||||| || |||||| ||| Sbjct 216656 GAACCACTGCTGAGAGAGAACCCCCGGCGCTTTGTCATCTTCCCTATCGAATACCATGAC 216715 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| ||||| || || |||||||| || || ||||| | ||||||||||| || Sbjct 216716 ATTTGGCAGATGTATAAGAAAGCCGAGGCCTCCTTTTGGACGGCAGAGGAGGTGGATCTT 216775 Query 116696 TCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 ||||| |||| ||| ||||||| | |||| | | ||| | | || || || Sbjct 216776 TCCAAAGACATTCAGC-ACTGGGAAGCCCTGAAGCCCGAGGAGAGATACTTTATATCACA 216834 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 ||| ||||| || || ||||||||||| ||||| ||||| |||||| |||| ||||| || Sbjct 216835 CGTTCTGGCTTTCTTTGCCGCCAGCGATGGCATAGTCAATGAGAATTTGGTGGAGCGGTT 216894 Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | || || || || | | ||||| || || ||||||||||| |||||||||||||| Sbjct 216895 CAGCCAAGAAGTTCAAATCACAGAGGCTCGCTGTTTCTACGGCTTCCAGATCGCCATGGA 216954 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCG-GAGG 116933 ||| | || || |||||||| ||||||||| || || | ||| ||| Sbjct 216955 AAACATTCATTCTGAAATGTACAGTCTCCTCATCGATACTTATATCAAAGATTCCAGAGA 217014 Query 116934 A--GAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGA 116991 | | || ||| | || || ||||||||||| ||||| || || || |||| | || Sbjct 217015 AAGGGAGTTCC---TCTTCAATGCCATCGAGACCATGCCCTGTGTGAA---GAAGTCGGA 217068 Query 116992 GTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTT 117051 ||||| |||||||||| | | || ||||||| | | || || ||| |||| ||||| Sbjct 217069 CTGGGCCTTGCGCTGGATTGGGGACAAAGAGGCCACTTATGGGGAACGCGTGGTAGCCTT 217128 Query 117052 CGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAA 117111 || ||||| || ||| |||| ||||| || ||| || | || || ||||| ||||| Sbjct 217129 TGCTGCCGTGGAAGGCATCTTTTTTTCTGGTTCTTTTGCGTCGATCTTCTGGCTGAAGAA 217188 Query 117112 ACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCT 117171 ||| || |||||||||||||| || || ||| || |||||| ||| || ||||| || Sbjct 217189 ACGGGGACTCATGCCCGGCCTCACCTTTTCCAATGAACTCATCAGCAGAGATGAGGGCCT 217248 Query 117172 GCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCG 117231 ||| || ||||| ||||| || |||||||||| || |||| |||| | | | | Sbjct 217249 GCACTGTGACTTCGCCTGCCTGATGTTCAAGCACCTGATGCATAGACCCTCAGAGCAGAG 217308 Query 117232 CGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCT 117291 || | |||||| || | |||| ||| ||||||||| |||||||| || || | Sbjct 217309 GGTGAAGGAGATTATCGTCAACGCCGTCAGAATCGAGCAGGAGTTCCTCACGGAGGCCTT 217368 Query 117292 GCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGC 117351 ||| ||| ||| | || | || ||||| ||| ||| |||||||||||||| || Sbjct 217369 GCCAGTGAAGCTGATTGGCATGAACTGCGAGCTCATGAAGCAGTACATCGAGTTCGTGGC 217428 Query 117352 CGACAGGCTGCTGCTCGAGCTGG 117374 |||||||| |||| ||||||| Sbjct 217429 TGACAGGCTCATGCTAGAGCTGG 217451 >seq2965 Length=1497097 Score = 185 bits (204), Expect = 9e-42 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| |||| || || ||| Sbjct 1203886 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTAGAGCCCAGT 1203945 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | ||||| |||||||||||| | |||||| Sbjct 1203946 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 1204005 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| ||| ||||| |||||||| |||| |||||||||| |||||||||| Sbjct 1204006 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAAC 1204065 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| ||||| || || ||||| ||||||| || Sbjct 1204066 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGAGGGGAGG 1204112 Score = 183 bits (202), Expect = 3e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || |||||||| || ||||| ||||| ||||||||| |||| || || ||| Sbjct 1203657 AATGCAGATCTTCGTAAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTAGAGCCCAG 1203716 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||||| || || | ||||| |||||||||||| | ||||| Sbjct 1203717 TGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCA 1203776 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| ||| ||||| |||||||| |||| |||||||||| |||||||| Sbjct 1203777 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCTGACTACAA 1203836 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| |||| ||||| || || ||||| |||| || ||| Sbjct 1203837 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGC 1203885 >seq3082 Length=10725151 Score = 145 bits (160), Expect = 8e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| ||||| || || ||||| ||||||||| | || || || || Sbjct 1251006 AAAATGCAAATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCC 1251065 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | ||||| | | | | | |||| || || | || || || ||||| || | ||| Sbjct 1251066 AGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCACCTGAC 1251125 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| | ||||||| || ||||| |||||||| || | ||||| || |||||| Sbjct 1251126 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTAC 1251185 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||| ||| |||| ||||| || ||| ||||| |||| || || Sbjct 1251186 AACATCCAGAAAGAGTCCACTCTGCACCTGGTGCTGCGCCTGAGAGGTGG 1251235 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| |||||||| | || || || ||| | Sbjct 1251237 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAGC 1251296 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | || ||||| ||||| || | |||||| Sbjct 1251297 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAG 1251356 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| |||||||| || | ||||| || ||||||||| Sbjct 1251357 CAGAGGCTTATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAAC 1251416 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| ||| |||| ||||| || ||| ||||| |||| || || Sbjct 1251417 ATCCAGAAAGAGTCCACTCTGCACCTGGTGCTGCGCCTGAGAGGTGG 1251463 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || || || ||| Sbjct 1251465 ATGCAGATCTTCGTGAAGACACTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 1251524 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | || ||||| ||||| || | |||||| Sbjct 1251525 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAG 1251584 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | ||||||| || ||||| |||||||| || | ||||| || ||||||||| Sbjct 1251585 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAAC 1251644 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| ||| | || ||||| || || | || ||||||| ||| Sbjct 1251645 ATCCAGAAAGAGTCTACTCTGCACCTGGTCCTCCGTCTGAGGGGTGGC 1251692 >seq3143 Length=88675666 Score = 123 bits (136), Expect = 3e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 ||||||||||||||||||| |||||||| ||||| ||||| || || || || || | Sbjct 4807023 TGGTGGCCTTCGCGGCCGTGGAGGGCGTGTTCTTCTCGGGGTCCTTTGCGGCTATCTTCT 4807082 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| | |||||| |||||||||| || ||| ||||||||||||| ||||| Sbjct 4807083 GGCTGAAGAAGAGAGGCCTCCTGCCCGGCCTCACCTTCTCCAACGAGCTCATCAGCAGGG 4807142 Query 117162 ACGAGG 117167 |||||| Sbjct 4807143 ACGAGG 4807148 Score = 96.9 bits (106), Expect = 4e-15 Identities = 92/116 (79%), Gaps = 4/116 (3%) Strand=Plus/Plus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| ||| |||||||||||||| | ||||| || |||||||||||||| || Sbjct 4804217 GGTGGAGCGCTTCAGCCAGGAGGTGCAGGTCCCTGAGGCCCGCTGCTTCTACGGCTTCCA 4804276 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTA 116916 |||| ||| |||||||| ||||| || ||||| | || ||||||||||| || Sbjct 4804277 GATCCTCATCGAGAACGTCCACTCCGAGATGTA--CAGCCTGCTCATCGACACCTA 4804330 >seq3135 Length=60673567 Score = 113 bits (124), Expect = 5e-20 Identities = 144/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| |||||||| || || || | |||||| ||||||||| | || || || ||| | Sbjct 60530223 ATGCAGATATTCGTGAAGACCCTAAGGGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 60530282 Query 40750 GACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | ||| || | |||| | ||||| | ||||| || |||||||| | ||||| Sbjct 60530283 GACACCAGTGAGAATG-TCAAAGCCAAAATCCAAGACAAGGAAGGCATCCCACCCGACCA 60530341 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || | || | | || |||||||||||||| |||| || || ||| |||||||| Sbjct 60530342 GCGGCTCCTGGTATTTGCCGGCAAACAGCTGGAGGACGGTCGGACTCTCTCGGACTACAA 60530401 Query 40869 CATCCAGAAGGAGGCC 40884 ||| ||||| ||| || Sbjct 60530402 CATTCAGAAAGAGTCC 60530417 >seq3126 Length=40167016 Score = 91.5 bits (100), Expect = 2e-13 Identities = 156/227 (69%), Gaps = 7/227 (3%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || |||| || | |||| ||||| ||| Sbjct 36688979 ATGCAGATCTTCGTGAAGACCCTGACGGGTAAGACCACCATCCTCGAGGTCGAGCCCAGT 36688920 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | |||| ||||| | ||||| ||| ||||||| | || ||| Sbjct 36688919 GACACCAAG-------TCAAAACCAAAATCCAAGACAAGGAGAGCATCCCACCTGAACAG 36688867 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || || | ||| ||||||||||||| || | | || ||| ||||||||| Sbjct 36688866 CAGTGCCTGATATTCGCCAGCAAACAGCTGGAGGATGGTTGGACTCTCTCAGACTACAAC 36688807 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| || ||| |||| || || || || || || || | || || Sbjct 36688806 ATCCAAAAAGAGTCCACCCTACACCTGGTACTGTGCCTGCGAGGTGG 36688760 >seq3109 Length=24440124 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||||| ||| || ||||||| || ||||| |||| |||| | || || || || Sbjct 19092103 AAAATGCAAAGCTTCATAGAAACGCTTACAGGCAAGACCACCACCCTGGAGGTGGAGCCC 19092162 Query 40747 ACCGACAGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | ||| | ||| || | | |||| || |||| | || || || || || || | Sbjct 19092163 TGCAACACCACTGCGAATG-TGAAGGCCAACATTCAGGCTAACGAAGGTATTCCTGCAGG 19092221 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || || | |||||| | | |||||| ||| |||| || | |||| || ||||| Sbjct 19092222 GCAACAGAGGCTCATCCATGTGGGCAAGCAGTTGGAAGATGGTTGCACTCTTTCTGACTA 19092281 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| ||| | | ||| ||||| ||||| || || ||||| | ||| Sbjct 19092282 CAACATCCTGAAAGGGTACACTCTGCACCTAGTCCTGTGCCTGAGGAGTGGC 19092333 >seq3018 Length=3443724 Score = 89.7 bits (98), Expect = 5e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || |||||| | ||||||||||| || || || || ||||| || |||||| ||| Sbjct 3379198 GAACCACTGCTGAGAGAGAACCCCCGGCGCTTTGTCATCTTCCCTATCGAATACCATGAC 3379139 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689 || |||| ||||| || || |||||||| || || ||||| | ||||||||| Sbjct 3379138 ATTTGGCAGATGTATAAGAAAGCCGAGGCCTCCTTTTGGACGGCAGAGGAGGTG 3379085 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091 || || ||| |||| ||||| || || || || ||| |||| ||||| || ||| || Sbjct 3376915 GGGGAACGCGTGGTAGCCTTTGCTGCTGTGGAAGGCATCTTTTTTTCTGGTTCTTTTGCG 3376856 Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151 | || || ||||| |||||||| || |||||||||||||| || || ||| || ||| Sbjct 3376855 TCGATCTTCTGGCTGAAGAAACGGGGACTCATGCCCGGCCTCACCTTTTCCAATGAACTC 3376796 Query 117152 ATCTCCAGGGACGAGG 117167 ||| ||| || |||| Sbjct 3376795 ATCAGCAGAGATGAGG 3376780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515198951885440