Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 412 4e-110
seq2965 185 9e-42
seq3082 145 8e-30
seq3143 123 3e-23
seq3135 113 5e-20
seq3126 91.5 2e-13
seq3109 91.5 2e-13
seq3018 89.7 5e-13
>seq3106
Length=22756556
Score = 412 bits (456), Expect = 4e-110
Identities = 577/803 (72%), Gaps = 11/803 (1%)
Strand=Plus/Plus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
|| || |||||| | ||||||||||| || || || || ||||| || |||||| |||
Sbjct 216656 GAACCACTGCTGAGAGAGAACCCCCGGCGCTTTGTCATCTTCCCTATCGAATACCATGAC 216715
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| ||||| || || |||||||| || || ||||| | ||||||||||| ||
Sbjct 216716 ATTTGGCAGATGTATAAGAAAGCCGAGGCCTCCTTTTGGACGGCAGAGGAGGTGGATCTT 216775
Query 116696 TCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754
||||| |||| ||| ||||||| | |||| | | ||| | | || || ||
Sbjct 216776 TCCAAAGACATTCAGC-ACTGGGAAGCCCTGAAGCCCGAGGAGAGATACTTTATATCACA 216834
Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814
||| ||||| || || ||||||||||| ||||| ||||| |||||| |||| ||||| ||
Sbjct 216835 CGTTCTGGCTTTCTTTGCCGCCAGCGATGGCATAGTCAATGAGAATTTGGTGGAGCGGTT 216894
Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874
| || || || || | | ||||| || || ||||||||||| ||||||||||||||
Sbjct 216895 CAGCCAAGAAGTTCAAATCACAGAGGCTCGCTGTTTCTACGGCTTCCAGATCGCCATGGA 216954
Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCG-GAGG 116933
||| | || || |||||||| ||||||||| || || | ||| |||
Sbjct 216955 AAACATTCATTCTGAAATGTACAGTCTCCTCATCGATACTTATATCAAAGATTCCAGAGA 217014
Query 116934 A--GAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGA 116991
| | || ||| | || || ||||||||||| ||||| || || || |||| | ||
Sbjct 217015 AAGGGAGTTCC---TCTTCAATGCCATCGAGACCATGCCCTGTGTGAA---GAAGTCGGA 217068
Query 116992 GTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTT 117051
||||| |||||||||| | | || ||||||| | | || || ||| |||| |||||
Sbjct 217069 CTGGGCCTTGCGCTGGATTGGGGACAAAGAGGCCACTTATGGGGAACGCGTGGTAGCCTT 217128
Query 117052 CGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAA 117111
|| ||||| || ||| |||| ||||| || ||| || | || || ||||| |||||
Sbjct 217129 TGCTGCCGTGGAAGGCATCTTTTTTTCTGGTTCTTTTGCGTCGATCTTCTGGCTGAAGAA 217188
Query 117112 ACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCT 117171
||| || |||||||||||||| || || ||| || |||||| ||| || ||||| ||
Sbjct 217189 ACGGGGACTCATGCCCGGCCTCACCTTTTCCAATGAACTCATCAGCAGAGATGAGGGCCT 217248
Query 117172 GCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCG 117231
||| || ||||| ||||| || |||||||||| || |||| |||| | | | |
Sbjct 217249 GCACTGTGACTTCGCCTGCCTGATGTTCAAGCACCTGATGCATAGACCCTCAGAGCAGAG 217308
Query 117232 CGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCT 117291
|| | |||||| || | |||| ||| ||||||||| |||||||| || || |
Sbjct 217309 GGTGAAGGAGATTATCGTCAACGCCGTCAGAATCGAGCAGGAGTTCCTCACGGAGGCCTT 217368
Query 117292 GCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGC 117351
||| ||| ||| | || | || ||||| ||| ||| |||||||||||||| ||
Sbjct 217369 GCCAGTGAAGCTGATTGGCATGAACTGCGAGCTCATGAAGCAGTACATCGAGTTCGTGGC 217428
Query 117352 CGACAGGCTGCTGCTCGAGCTGG 117374
|||||||| |||| |||||||
Sbjct 217429 TGACAGGCTCATGCTAGAGCTGG 217451
>seq2965
Length=1497097
Score = 185 bits (204), Expect = 9e-42
Identities = 177/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| ||||| ||||||||| |||| || || |||
Sbjct 1203886 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTAGAGCCCAGT 1203945
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||||| || || | ||||| |||||||||||| | ||||||
Sbjct 1203946 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 1204005
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | || |||| ||| ||||| |||||||| |||| |||||||||| ||||||||||
Sbjct 1204006 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAAC 1204065
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||| |||| ||||| || || ||||| ||||||| ||
Sbjct 1204066 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGAGGGGAGG 1204112
Score = 183 bits (202), Expect = 3e-41
Identities = 178/229 (78%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || |||||||| || ||||| ||||| ||||||||| |||| || || |||
Sbjct 1203657 AATGCAGATCTTCGTAAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTAGAGCCCAG 1203716
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | | |||||| || || | ||||| |||||||||||| | |||||
Sbjct 1203717 TGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCA 1203776
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | || |||| ||| ||||| |||||||| |||| |||||||||| ||||||||
Sbjct 1203777 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCTGACTACAA 1203836
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
||||||||||||| |||| ||||| || || ||||| |||| || |||
Sbjct 1203837 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGC 1203885
>seq3082
Length=10725151
Score = 145 bits (160), Expect = 8e-30
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
||||||||||| ||||| ||||| || || ||||| ||||||||| | || || || ||
Sbjct 1251006 AAAATGCAAATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCTTGGAGGTGGAGCCC 1251065
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| ||||| | | | | | |||| || || | || || || ||||| || | |||
Sbjct 1251066 AGCGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCACCTGAC 1251125
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| | ||||||| || ||||| |||||||| || | ||||| || ||||||
Sbjct 1251126 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTAC 1251185
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||||| ||| |||| ||||| || ||| ||||| |||| || ||
Sbjct 1251186 AACATCCAGAAAGAGTCCACTCTGCACCTGGTGCTGCGCCTGAGAGGTGG 1251235
Score = 125 bits (138), Expect = 7e-24
Identities = 164/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| |||||||| | || || || ||| |
Sbjct 1251237 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAGC 1251296
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | |||| || || | || ||||| ||||| || | ||||||
Sbjct 1251297 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAG 1251356
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | || |||| || ||||| |||||||| || | ||||| || |||||||||
Sbjct 1251357 CAGAGGCTTATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAAC 1251416
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||| ||| |||| ||||| || ||| ||||| |||| || ||
Sbjct 1251417 ATCCAGAAAGAGTCCACTCTGCACCTGGTGCTGCGCCTGAGAGGTGG 1251463
Score = 118 bits (130), Expect = 1e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| ||||||||| | || || || |||
Sbjct 1251465 ATGCAGATCTTCGTGAAGACACTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 1251524
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | |||| || || | || ||||| ||||| || | ||||||
Sbjct 1251525 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAG 1251584
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | ||||||| || ||||| |||||||| || | ||||| || |||||||||
Sbjct 1251585 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAAC 1251644
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||| ||| | || ||||| || || | || ||||||| |||
Sbjct 1251645 ATCCAGAAAGAGTCTACTCTGCACCTGGTCCTCCGTCTGAGGGGTGGC 1251692
>seq3143
Length=88675666
Score = 123 bits (136), Expect = 3e-23
Identities = 103/126 (82%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
||||||||||||||||||| |||||||| ||||| ||||| || || || || || |
Sbjct 4807023 TGGTGGCCTTCGCGGCCGTGGAGGGCGTGTTCTTCTCGGGGTCCTTTGCGGCTATCTTCT 4807082
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|||| ||||| | |||||| |||||||||| || ||| ||||||||||||| |||||
Sbjct 4807083 GGCTGAAGAAGAGAGGCCTCCTGCCCGGCCTCACCTTCTCCAACGAGCTCATCAGCAGGG 4807142
Query 117162 ACGAGG 117167
||||||
Sbjct 4807143 ACGAGG 4807148
Score = 96.9 bits (106), Expect = 4e-15
Identities = 92/116 (79%), Gaps = 4/116 (3%)
Strand=Plus/Plus
Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862
||| ||||| ||| |||||||||||||| | ||||| || |||||||||||||| ||
Sbjct 4804217 GGTGGAGCGCTTCAGCCAGGAGGTGCAGGTCCCTGAGGCCCGCTGCTTCTACGGCTTCCA 4804276
Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTA 116916
|||| ||| |||||||| ||||| || ||||| | || ||||||||||| ||
Sbjct 4804277 GATCCTCATCGAGAACGTCCACTCCGAGATGTA--CAGCCTGCTCATCGACACCTA 4804330
>seq3135
Length=60673567
Score = 113 bits (124), Expect = 5e-20
Identities = 144/196 (73%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| |||||||| || || || | |||||| ||||||||| | || || || ||| |
Sbjct 60530223 ATGCAGATATTCGTGAAGACCCTAAGGGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 60530282
Query 40750 GACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | ||| || | |||| | ||||| | ||||| || |||||||| | |||||
Sbjct 60530283 GACACCAGTGAGAATG-TCAAAGCCAAAATCCAAGACAAGGAAGGCATCCCACCCGACCA 60530341
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
|| | || | | || |||||||||||||| |||| || || ||| ||||||||
Sbjct 60530342 GCGGCTCCTGGTATTTGCCGGCAAACAGCTGGAGGACGGTCGGACTCTCTCGGACTACAA 60530401
Query 40869 CATCCAGAAGGAGGCC 40884
||| ||||| ||| ||
Sbjct 60530402 CATTCAGAAAGAGTCC 60530417
>seq3126
Length=40167016
Score = 91.5 bits (100), Expect = 2e-13
Identities = 156/227 (69%), Gaps = 7/227 (3%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || ||||| || |||| || | |||| ||||| |||
Sbjct 36688979 ATGCAGATCTTCGTGAAGACCCTGACGGGTAAGACCACCATCCTCGAGGTCGAGCCCAGT 36688920
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | |||| ||||| | ||||| ||| ||||||| | || |||
Sbjct 36688919 GACACCAAG-------TCAAAACCAAAATCCAAGACAAGGAGAGCATCCCACCTGAACAG 36688867
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | || || | ||| ||||||||||||| || | | || ||| |||||||||
Sbjct 36688866 CAGTGCCTGATATTCGCCAGCAAACAGCTGGAGGATGGTTGGACTCTCTCAGACTACAAC 36688807
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||| || ||| |||| || || || || || || || | || ||
Sbjct 36688806 ATCCAAAAAGAGTCCACCCTACACCTGGTACTGTGCCTGCGAGGTGG 36688760
>seq3109
Length=24440124
Score = 91.5 bits (100), Expect = 2e-13
Identities = 161/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|||||||||| ||| || ||||||| || ||||| |||| |||| | || || || ||
Sbjct 19092103 AAAATGCAAAGCTTCATAGAAACGCTTACAGGCAAGACCACCACCCTGGAGGTGGAGCCC 19092162
Query 40747 ACCGACAGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
| ||| | ||| || | | |||| || |||| | || || || || || || |
Sbjct 19092163 TGCAACACCACTGCGAATG-TGAAGGCCAACATTCAGGCTAACGAAGGTATTCCTGCAGG 19092221
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
|| || | |||||| | | |||||| ||| |||| || | |||| || |||||
Sbjct 19092222 GCAACAGAGGCTCATCCATGTGGGCAAGCAGTTGGAAGATGGTTGCACTCTTTCTGACTA 19092281
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||| ||| | | ||| ||||| ||||| || || ||||| | |||
Sbjct 19092282 CAACATCCTGAAAGGGTACACTCTGCACCTAGTCCTGTGCCTGAGGAGTGGC 19092333
>seq3018
Length=3443724
Score = 89.7 bits (98), Expect = 5e-13
Identities = 88/114 (77%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
|| || |||||| | ||||||||||| || || || || ||||| || |||||| |||
Sbjct 3379198 GAACCACTGCTGAGAGAGAACCCCCGGCGCTTTGTCATCTTCCCTATCGAATACCATGAC 3379139
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTG 116689
|| |||| ||||| || || |||||||| || || ||||| | |||||||||
Sbjct 3379138 ATTTGGCAGATGTATAAGAAAGCCGAGGCCTCCTTTTGGACGGCAGAGGAGGTG 3379085
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 117032 GGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCC 117091
|| || ||| |||| ||||| || || || || ||| |||| ||||| || ||| ||
Sbjct 3376915 GGGGAACGCGTGGTAGCCTTTGCTGCTGTGGAAGGCATCTTTTTTTCTGGTTCTTTTGCG 3376856
Query 117092 GCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTC 117151
| || || ||||| |||||||| || |||||||||||||| || || ||| || |||
Sbjct 3376855 TCGATCTTCTGGCTGAAGAAACGGGGACTCATGCCCGGCCTCACCTTTTCCAATGAACTC 3376796
Query 117152 ATCTCCAGGGACGAGG 117167
||| ||| || ||||
Sbjct 3376795 ATCAGCAGAGATGAGG 3376780
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515198951885440
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