Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2965 109 5e-19 seq3063 100 2e-16 seq3082 93.3 4e-14 seq3126 91.5 1e-13 seq3135 84.2 2e-11 >seq2965 Length=1497097 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| ||| | |||||| || || Sbjct 1204094 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGCCCGTCTTCC 1204035 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| |||| || | |||||| || || || ||||||||||||||| Sbjct 1204034 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGG 1203975 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| || ||| ||||||| ||| | || ||| Sbjct 1203974 ATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTCTTG 1203915 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || || || || || ||||||||| Sbjct 1203914 CCAGTGAGGGTCTTCACGAAGATCTGCATG 1203885 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| || | |||||| || || Sbjct 1203866 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGCCCGTCTTCC 1203807 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || |||||| |||| || | |||||| || || || ||||||||||||||| Sbjct 1203806 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGG 1203747 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| || ||| ||||||| ||| | || ||| Sbjct 1203746 ATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACCTCGAGGGTGATGGTCTTG 1203687 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||| || |||||||| Sbjct 1203686 CCAGTGAGGGTCTTTACGAAGATCTGCAT 1203658 >seq3063 Length=7952490 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | |||| || ||||| |||||||||||||||| Sbjct 5877730 ACCACCACGGAGTCTCAACACAAGATGGAGAGTGGACTCCCTTTGAATGTTGTAATCAGA 5877671 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||||| ||| || || || || ||| | |||| || | |||||||| ||||| Sbjct 5877670 CAAAGTGCATCCATCTTCCAGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGG 5877611 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| ||| || || || || | ||| | |||| | | ||| || Sbjct 5877610 AATTCCTTCCTTATCTTGGATCTTGGCCTTTACATTTTCTATAGTGTTGGAGGGCTCAAC 5877551 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||| | || | || || || |||||||| ||||||||||| Sbjct 5877550 CTGGAGGGTGATGGTCCTCCCCGTAAGGGTTTTTACGAAAATCTGCAT 5877503 >seq3082 Length=10725151 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | ||||||||||| || |||||||| || | |||||| ||| || Sbjct 1251673 ACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCTTCC 1251614 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || ||||| ||||| || || || Sbjct 1251613 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGG 1251554 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| || ||| || || | ||| | || ||| Sbjct 1251553 ATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTG 1251494 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || || |||||||| Sbjct 1251493 CCAGTCAGTGTCTTCACGAAGATCTGCAT 1251465 >seq3126 Length=40167016 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/209 (69%), Gaps = 7/209 (3%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||||||||| |||||||| || | ||| | |||||| Sbjct 36688778 ACCAGGTGTAGGGTGGACTCTTTTTGGATGTTGTAGTCTGAGAGAGTCCAACCATCCTCC 36688837 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| | ||| | || || | |||||| || || || |||| |||||||||| Sbjct 36688838 AGCTGTTTGCTGGCGAATATCAGGCACTGCTGTTCAGGTGGGATGCTCTCCTTGTCTTGG 36688897 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||| || | |||||| || ||||||||||| | | || || Sbjct 36688898 ATTTTGGTTTTGACTT-------GGTGTCACTGGGCTCGACCTCGAGGATGGTGGTCTTA 36688950 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || || |||||||| Sbjct 36688951 CCCGTCAGGGTCTTCACGAAGATCTGCAT 36688979 >seq3135 Length=60673567 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 118545 GACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCG 118604 |||||||| ||||||||||| || | ||| || ||||| |||||||| || || Sbjct 60530416 GACTCTTTCTGAATGTTGTAGTCCGAGAGAGTCCGACCGTCCTCCAGCTGTTTGCCGGCA 60530357 Query 118605 TAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACC 118664 | | || || |||| ||||| || ||||| ||||||||| ||||| ||| || Sbjct 60530356 AATACCAGGAGCCGCTGGTCGGGTGGGATGCCTTCCTTGTCTTGGATTTTGGCTTTGACA 60530297 Query 118665 TGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 118724 | || |||||| || ||| ||||| | ||| | || ||||| | || || || Sbjct 60530296 TTCTCACTGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCCCTTAGGGTCTTC 60530237 Query 118725 ACAAAAATCTGCAT 118738 || || |||||||| Sbjct 60530236 ACGAATATCTGCAT 60530223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433813776703648