Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq3063 84.2 3e-11 >seq3063 Length=7952490 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCT-TTAGATATATTATAATCTGA 146109 ||||| | ||||| || || | ||| | ||| || || || || || || ||||| || Sbjct 5877729 CCACCACGGAGTCTCAACACAAGATGGAGAGTGGACTCCCTTTGA-ATGTTGTAATCAGA 5877671 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || ||| |||| |||| ||||||||||| ||||| Sbjct 5877670 CAAAGTGCATCCATCTTCCAGTTGCTTACCAACAAAGATCAGCCTTTGCTGATCAGGAGG 5877611 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| |||||||| Sbjct 5877610 AATTCCTTCCTTATCTTG 5877593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743497179412480