Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq3106 257 2e-63 seq3143 98.7 9e-16 seq3018 82.4 7e-11 >seq3106 Length=22756556 Score = 257 bits (284), Expect = 2e-63 Identities = 598/892 (67%), Gaps = 25/892 (3%) Strand=Plus/Minus Query 15929 GACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCT 15988 ||||||||| ||| | ||||| || | || ||||| |||||||| ||||| || ||| Sbjct 217572 GACATAACTCCCATCCTCTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCT 217513 Query 15989 TCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT----TTGAACAATAGTATTTATC 16044 |||| |||||||| ||||| || ||||| ||||||| ||||| || || | Sbjct 217512 TCTAGAGAAATATTCTCCATGAAGTCAAATGGATTTTCCACTTGAAAAACC----TTGCC 217457 Query 16045 GCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATC 16104 | |||| || | || | || || ||||| || || || ||||| ||||| | || Sbjct 217456 AAAGCCCAGCTCTAGCATGAGCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTC 217397 Query 16105 ACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATT 16164 |||||||| || || | || || || | || || || | || | | || || | Sbjct 217396 GCAGTTCATGCCAATCAGCTTCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCT 217337 Query 16165 AACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTA---ATAAG-T 16220 || || | | ||| || || | || | || | | |||||| || || || | Sbjct 217336 GACGGCGTTGACGATAATCTCCTTCACC-CTCTGCT---CTGAGGGTCTATGCATCAGGT 217281 Query 16221 GTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGT 16280 | || ||||| | || || || ||||| |||| || || || || || || | || | Sbjct 217280 GCTTGAACATCAGGCAGGCGAAGTCACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCAT 217221 Query 16281 TTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATG 16340 | ||||| || || || ||||| ||||| ||||| || | ||| || || | ||||| | Sbjct 217220 TGGAAAAGGTGAGGCCGGGCATGAGTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAG 217161 Query 16341 AACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTT- 16399 |||||||||| || || ||||| || || ||||| || |||| || || || || || Sbjct 217160 AACCAGAAAAAAAGATGCCTTCCACGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGG 217101 Query 16400 -CTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCAT 16458 || ||| | | | ||||| ||||| | | || | | |||||| ||| Sbjct 217100 CCTCTTTGTCCC--CAATCCAGCGCAAGGCCCAGTCCGACTTCT---TCACACAGGGCAT 217046 Query 16459 GTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTAT 16518 | |||| || ||||| || | | | ||||| || |||| ||||||||||| || Sbjct 217045 GGTCTCGATGGCATTGAAGAGGAACTCCCTTTCTCTGGAATCTTTGATATAAGTATCGAT 216986 Query 16519 TAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCA 16578 || | ||| |||||||| |||||||| || ||||| || ||||| || || || || || Sbjct 216985 GAGGAGACTGTACATTTCAGAATGAATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACA 216926 Query 16579 TCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTAT 16638 | ||| || | ||||| ||||| | |||| || | || || || || ||||| Sbjct 216925 GCGAGCCTCTGTGATTTGAACTTCTTGGCTGAACCGCTCCACCAAATTCTCATTGACTAT 216866 Query 16639 TCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGT-TATCTG 16697 |||||||| || ||||| || || || | |||| ||||| | | | || | || Sbjct 216865 GCCATCGCTGGCGGCAAAGAAAGCCAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTT 216806 Query 16698 AAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAG 16757 | | || ||||| || ||||| || | ||| ||||| ||| | |||||||| | Sbjct 216805 CAGGGCTT-CCCAGTGCTGAATGTCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGG 216747 Query 16758 AAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAA 16809 | || | || || |||||||| | ||| ||||| | ||| | ||||| || Sbjct 216746 AGGCCTCGGCTTTCTTATACATCTGCCAAATGTCATGGTATTCGATAGGGAA 216695 >seq3143 Length=88675666 Score = 98.7 bits (108), Expect = 9e-16 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 15947 TGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCC 16006 ||||| || ||||| ||| ||||||||||||||||| |||||||| ||||| |||||| Sbjct 4813948 TGATACTCGGAAACTCGCTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 4813889 Query 16007 ATAAAATCAAAAGGATTTT 16025 ||||||||||| ||||||| Sbjct 4813888 ATAAAATCAAAGGGATTTT 4813870 >seq3018 Length=3443724 Score = 82.4 bits (90), Expect = 7e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 16488 tttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 ||||| || |||| ||||||||||| || || | ||| |||||||| |||||||| | Sbjct 3377994 TTTCTCTGGAATCTTTGATATAAGTATCGATGAGGAGACTGTACATTTCGGAATGAATGT 3378053 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 | ||||| || ||||| || || || || || | ||| || | ||||| ||||| Sbjct 3378054 TTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTC 3378108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462493823278400