Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq3042 1072 0.0
seq3122 141 6e-29
seq3105 89.7 4e-13
>seq3042
Length=4956042
Score = 1072 bits (1188), Expect = 0.0
Identities = 1008/1284 (79%), Gaps = 0/1284 (0%)
Strand=Plus/Plus
Query 107353 ATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCC 107412
|||| ||||| ||||||||| || ||| |||||||| |||| || ||| | | | |
Sbjct 2814629 ATCACATGTGGATCCTGGGCTGTTACATGGTGCTGGCCCTTGTGGCTTTGAAAGTGACTC 2814688
Query 107413 TCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGC 107472
|| || | || ||||| | || | || || |||| |||| ||| || | ||||
Sbjct 2814689 TCCGGCTGAAGTGTGACTTCGAGCACCTGTATTTGGACTCCAAGGAGTTTCCCGCTCAGT 2814748
Query 107473 ACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTT 107532
|||||||| | || ||||||| ||||| ||||||||| |||| | |||||||||||
Sbjct 2814749 ACTGTAGGAATATCTTGTACAGATCCCTGATGCTGCCAGCCCAGAGGTTCATCAACTGTT 2814808
Query 107533 CTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAG 107592
| ||| ||| |||||||||| ||||||||| ||||||| | || | |||||||| |
Sbjct 2814809 CGGGGGTCAGCAGAGGGGACCACGAAGCAGTGATCCAGGCTGTGCTGAATAACCTGGAGG 2814868
Query 107593 TGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTG 107652
| |||||||||||| |||| || ||| | | ||| || || || ||||||| |
Sbjct 2814869 TCAAGAAAAAGCGGAAGCCTTTCTCTGAGGCGGACTACATCTCTATGACTCGAGACTGCG 2814928
Query 107653 AGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACT 107712
|| ||||| ||||| ||| |||| | ||| | | ||||| ||||| ||| |||||
Sbjct 2814929 AGAAATTCAAAGCCCAGCGGAGGTTCGTGCAGGTGGCCCTGAGCAAAGAGGAGTCAGACT 2814988
Query 107713 TCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGC 107772
||||||| || ||||| |||||||| |||||||| || || |||||||| |||||||||
Sbjct 2814989 TCCCCATCGCGTACTCTATGGTGGTTCATGAGAAAATCGAGAACTTTGAGAGGCTGCTGC 2815048
Query 107773 GAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGA 107832
|||| ||||| || ||||| | |||||| |||||||||| ||| || ||||| |
Sbjct 2815049 GAGCTGTGTACATGCCACAGAATGTGTACTGTATCCACGTGGACAAGAAATCTCCAGAAA 2815108
Query 107833 CTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTA 107892
||| ||||||| |||| ||| || |||||||||||| ||||||||||| ||||| |
Sbjct 2815109 TGTTCCAAGAGGCAGTCAGGGCGATCGCTTCCTGCTTCCCAAATGTCTTCATAGCCAGCA 2815168
Query 107893 AGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGG 107952
|| |||| || |||||||| |||||||||||||| ||||| |||||||||||||| ||||
Sbjct 2815169 AGCTGGTTCCCGTGGTTTACGCCTCCTGGTCCAGGGTGCAGGCTGACCTGAACTGCATGG 2815228
Query 107953 AAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACT 108012
| |||||||||| |||| |||||| |||| ||||| |||||||| || ||||||||||
Sbjct 2815229 AGGACTTGCTCCGGAGCCCAGTGCGGTGGACCTACTTGCTGAATACCTGTGGGACAGACT 2815288
Query 108013 TCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACA 108072
| |||||||||||||| || |||||||||| |||||| | ||||||||| || |||||||
Sbjct 2815289 TTCCCATAAAGACCAACGCTGAGATGGTCCGGGCCCTGAGGATGTTGAACGGGAAGAACA 2815348
Query 108073 GTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGG 108132
| |||||||| || | || |||| |||||||| || |||||||| | ||| | ||
Sbjct 2815349 GCATGGAGTCAGAAATCCCCAGCGAGTACAAAAAAACCCGATGGAAATATCACTACGTGG 2815408
Query 108133 TGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCA 108192
||| |||| ||||| |||||||||| |||||| ||||||||| | || || |||
Sbjct 2815409 TGAAGGACAAGTTGTACATAACCAGCAAGAAGAAGGAGCCTCCCCCTTACAACGTAACCA 2815468
Query 108193 TGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACA 108252
||||||| || |||||||| ||||||| ||||| | ||| ||||| || ||| || | |
Sbjct 2815469 TGTTCACCGGCAATGCCTACATTGTGGCTTCTCGGGACTTCGTCCATCACGTCCTAAATA 2815528
Query 108253 ACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACC 108312
||||||||||||| ||| | |||||||| ||||||||||| || || |||||||| |
Sbjct 2815529 ACCCTAAATCCCAGCAGCTGATCGAATGGGTGAAAGACACCTACAGTCCTGACGAACATC 2815588
Query 108313 TCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGT 108372
||||||||||||| ||||| || || |||||||| |||||| || || ||||||
Sbjct 2815589 TCTGGGCCACCCTCCAGCGGGCCCCCTGGATGCCCGGCTCTTCGCCCTTGCATGCCAAGT 2815648
Query 108373 ATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAG 108432
|| ||||||| |||||||| ||||| |||||||| |||||||||||| | || ||||| |
Sbjct 2815649 ATGACATCTCGGACATGACCGCCATTGCCAGGCTGGTCAAGTGGCAGCAACATGAGGGTG 2815708
Query 108433 ATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCA 108492
| ||||| |||||| ||||||| ||| |||||||| |||| ||| ||||||||||||
Sbjct 2815709 ACATCAGCCAGGGGGCACCTTATGGACCTTGCTCTGGGGTCCACCGGCGGGCCATCTGCA 2815768
Query 108493 TTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGT 108552
|||| ||||||||||||||| ||||||| || ||||| || || || ||||| |||||||
Sbjct 2815769 TTTATGGGGCCGGGGACCTGCACTGGATGCTGCAGAATCACCATCTGTTGGCCAACAAGT 2815828
Query 108553 TTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGG 108612
||||||| | |||||||||||| || || |||||| | ||||||||||| ||||| ||||
Sbjct 2815829 TTGACCCAAAGGTGGATGATAATGTTCTTCAGTGCCTGGAAGAGTACCTGCGTCACAAGG 2815888
Query 108613 CCATCTATGGGACTGAACTTTGAG 108636
|||| |||||| || || ||||
Sbjct 2815889 CCATTTATGGGGTTGGGCTGTGAG 2815912
>seq3122
Length=33939536
Score = 141 bits (156), Expect = 6e-29
Identities = 577/895 (64%), Gaps = 47/895 (5%)
Strand=Plus/Plus
Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747
|| || || ||||| ||| || |||||| ||||| ||||| || ||||||||| | ||
Sbjct 27422742 CCCCTTAGCAAAGAGGAGGCAGGCTTCCCGATTGCGTACTCCATAGTGGTCCATCACAAA 27422801
Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807
|| || | |||| |||| || | ||| | ||| |||||||| | || || ||
Sbjct 27422802 ATCGAGATGCTTGACAGGCTTCTAAGGGCCATTTATATGCCTCAGAATTTCTATTGCATC 27422861
Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867
|| ||||| || || || | |||| || ||||| || | ||| |||||
Sbjct 27422862 CATGTGGACAGAAAATCAAAGGACTCCTTCATAGCCGCGGTGAAAGGCATCGCGTCCTGT 27422921
Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927
||| |||||||| |||||||| || ||| ||||| || || || ||| | |
Sbjct 27422922 TTCAGGAATGTCTTTGTGGCCAGTCAGCTGGAGAGCGTGGTCTACGCATCGTGGAGCCGG 27422981
Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGC--CATGGAAGT 107985
||||| |||||||||||||| ||| | ||| | || |||| | || || |||||||
Sbjct 27422982 GTGCAGGCTGACCTGAACTGCATGAAGGACCT-CTACAGA-ATGAGCGCGGACTGGAAGT 27423039
Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045
|| | | || || |||| || || ||||| || ||||| || || ||| |
Sbjct 27423040 ACCTGATCAACCTTTGTGGGATGGATTTTCCCATTAAAACCAACCTGGAAATTGTCAGGA 27423099
Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTG---AGGTACCTTCTGAGTCCa 108102
|||||| ||| | |||| | |||||| ||||| | | || | || || | ||
Sbjct 27423100 AGCTCAAGTCGTTCATGGGTGAAAACAGTCTGGAGACGGAGAAGATGCCATCCCA---CA 27423156
Query 108103 aaaaaaaTCGCTGGAAATACCGCTATG---------------AGGTGACAGACACACTGT 108147
|| | | | ||||| | ||||| || |||||||||| |
Sbjct 27423157 AAGCAGAAAGGTGGAAGAGGCACTATGCAGTTGTCGACGGGAAGCTGACAGACAC-GGGG 27423215
Query 108148 ACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATG 108207
|||| ||| || | | | ||| || || | || ||| | ||| |||||| |
Sbjct 27423216 ACCC--CCA--AA----ACGCAGCCT-CCGCTCAAAA--CACCTCTTTTCTCAGGGAGCG 27423264
Query 108208 CCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAA-CCCTAAATCCCAA 108266
|||| ||||||| | | | | ||| |||| | || || | |||| |
Sbjct 27423265 CCTACTTTGTGGTCAGCAGGGAGTATGTGGGCTATGTGCTGGAAAATGAAGACATCCGGA 27423324
Query 108267 AGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTT 108326
|| | | || |||| ||||||| || ||||| || || | ||||||||||| |
Sbjct 27423325 AG-TTCATGGAGTGGGCACAAGACACGTACAGCCCTGATGAGTATCTCTGGGCCACGATC 27423383
Query 108327 CAGCGTGCTCCGTG-GATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGA 108385
|| | | ||| || | || ||||| | || ||| |||||| || | || ||
Sbjct 27423384 CAAAG-GATCCCTGAGGCCCCAGGCTCCCTGCCCCTGAACCACAAGTACGACCTATCTGA 27423442
Query 108386 CATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGG 108445
|||| ||| | |||||| |||||||||||||||||| || || || | | || |||
Sbjct 27423443 CATGCAGGCCGTGGCCAGGTTCGTCAAGTGGCAGTACCTTGAAGGGGACCTGAACAAGGG 27423502
Query 108446 GGCGCCTTATGCACCCTGCTCTGGAATCCAT---CGGAGGGCCATCTGCATTTACGGGGC 108502
||||| ||| | || || ||| ||||| || || | | ||||||| || ||
Sbjct 27423503 CGCGCCCTATCCCCCGTGTGATGGGGTCCATGTACGCAG---CGTGTGCATTTTTGGAGC 27423559
Query 108503 CGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557
|||||| || ||||| || | || || ||| | || || ||||||||||||
Sbjct 27423560 TGGGGACTTGACGTGGATGCTGCGCAAACACCACTTTTTTGCCAACAAGTTTGAC 27423614
>seq3105
Length=21505965
Score = 89.7 bits (98), Expect = 4e-13
Identities = 198/295 (67%), Gaps = 18/295 (6%)
Strand=Plus/Plus
Query 107787 CCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCG 107846
||||| || || |||||||| |||||||||| |||| | | | |||||||| |||
Sbjct 6660360 CCTCAAAATATCTACTGTGTGCACGTGGATGAGAAGGCGACTGCTGAATTCAAAGATGCG 6660419
Query 107847 GTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTG 107906
|| || | | |||||||||||| | |||| ||||| | | ||| ||||||
Sbjct 6660420 GTGGAGCAGTTGCTGAGCTGCTTCCCCAACGCCTTCCTGGCCTCCAGGATGGAGCCGGTG 6660479
Query 107907 GTTTATGCCTCCTGG----TCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTG-- 107960
|| || | ||| ||||| | || || |||||| ||||| | ||| ||
Sbjct 6660480 GTCTACG----GTGGGATTTCCAGGCTCCAGGCCGACCTGCACTGTCTAAGGGACCTGGT 6660535
Query 107961 ---CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCC 108017
||||| || ||||| ||||||||| | || || || |||||| || |||||
Sbjct 6660536 GGCCTCCA-AG----GTGCCCTGGAAGTACGTCCTCAACACCTGCGGGCAGGATTTCCCA 6660590
Query 108018 ATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACA 108072
| |||||||| ||||| |||| | ||| ||| || || || |||||||
Sbjct 6660591 CTGAAGACCAACAAGGAGATCGTCCAGTACCTGAAGGGATTCAAAGGGAAGAACA 6660645
Score = 87.8 bits (96), Expect = 1e-12
Identities = 247/374 (66%), Gaps = 24/374 (6%)
Strand=Plus/Plus
Query 107711 CTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCT 107770
||||||| | |||||| |||||| | || || | | || | ||| || ||||| |
Sbjct 6687675 CTTCCCCCTGGCCTACGTCATGGTGCTGCACAAGGACTTCGACACCTTCGAGCGGCTCTT 6687734
Query 107771 GCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCC---CC 107827
|| ||||| || || || || | ||||| || |||||||| | ||| || ||
Sbjct 6687735 CCGCGCCGTCTACATGCCGCACAATGTCTACTGCGTGCACGTGGACGCCAAGGCCGACCC 6687794
Query 107828 AGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGC 107887
||| || || || | | || || | | | |||||||||||| | |||| ||||
Sbjct 6687795 CGAG--TTCCACAGCG-CAGTGCAGCTCTTGCTGAGCTGCTTCCCCAACGCCTTCCTGGC 6687851
Query 107888 CAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGG----TCCAGAGTGCAAGCTGACCTGA 107943
| | | |||| |||||||| || | ||| ||||| | || ||||||||||
Sbjct 6687852 CTCCAGGATGGTGCCGGTGGTCTACG----GTGGGATTTCCAGGCTCCAGGCTGACCTGA 6687907
Query 107944 ACTGTATGGAAGACTTG-----CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATAC 107998
|||| || ||| || |||| ||| ||||| ||||||||| | | || ||
Sbjct 6687908 ACTGCCTGAGGGACCTGGTGGCCTCC-GAG----GTGCCCTGGAAGTACGTCATCAACAC 6687962
Query 107999 ATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTT 108058
|||||| || ||||| | |||||||| ||||| |||| | ||| ||| ||
Sbjct 6687963 CTGCGGGCAGGATTTCCCACTGAAGACCAACAAGGAGATCGTCCAGCACCTGAAGGGATT 6688022
Query 108059 GAAGGGTAAGAACA 108072
|| || |||||||
Sbjct 6688023 CAAAGGGAAGAACA 6688036
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 348255455210256
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