Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq3042 1072 0.0 seq3122 141 6e-29 seq3105 89.7 4e-13 >seq3042 Length=4956042 Score = 1072 bits (1188), Expect = 0.0 Identities = 1008/1284 (79%), Gaps = 0/1284 (0%) Strand=Plus/Plus Query 107353 ATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCC 107412 |||| ||||| ||||||||| || ||| |||||||| |||| || ||| | | | | Sbjct 2814629 ATCACATGTGGATCCTGGGCTGTTACATGGTGCTGGCCCTTGTGGCTTTGAAAGTGACTC 2814688 Query 107413 TCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGC 107472 || || | || ||||| | || | || || |||| |||| ||| || | |||| Sbjct 2814689 TCCGGCTGAAGTGTGACTTCGAGCACCTGTATTTGGACTCCAAGGAGTTTCCCGCTCAGT 2814748 Query 107473 ACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTT 107532 |||||||| | || ||||||| ||||| ||||||||| |||| | ||||||||||| Sbjct 2814749 ACTGTAGGAATATCTTGTACAGATCCCTGATGCTGCCAGCCCAGAGGTTCATCAACTGTT 2814808 Query 107533 CTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAG 107592 | ||| ||| |||||||||| ||||||||| ||||||| | || | |||||||| | Sbjct 2814809 CGGGGGTCAGCAGAGGGGACCACGAAGCAGTGATCCAGGCTGTGCTGAATAACCTGGAGG 2814868 Query 107593 TGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTG 107652 | |||||||||||| |||| || ||| | | ||| || || || ||||||| | Sbjct 2814869 TCAAGAAAAAGCGGAAGCCTTTCTCTGAGGCGGACTACATCTCTATGACTCGAGACTGCG 2814928 Query 107653 AGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACT 107712 || ||||| ||||| ||| |||| | ||| | | ||||| ||||| ||| ||||| Sbjct 2814929 AGAAATTCAAAGCCCAGCGGAGGTTCGTGCAGGTGGCCCTGAGCAAAGAGGAGTCAGACT 2814988 Query 107713 TCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGC 107772 ||||||| || ||||| |||||||| |||||||| || || |||||||| ||||||||| Sbjct 2814989 TCCCCATCGCGTACTCTATGGTGGTTCATGAGAAAATCGAGAACTTTGAGAGGCTGCTGC 2815048 Query 107773 GAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGA 107832 |||| ||||| || ||||| | |||||| |||||||||| ||| || ||||| | Sbjct 2815049 GAGCTGTGTACATGCCACAGAATGTGTACTGTATCCACGTGGACAAGAAATCTCCAGAAA 2815108 Query 107833 CTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTA 107892 ||| ||||||| |||| ||| || |||||||||||| ||||||||||| ||||| | Sbjct 2815109 TGTTCCAAGAGGCAGTCAGGGCGATCGCTTCCTGCTTCCCAAATGTCTTCATAGCCAGCA 2815168 Query 107893 AGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGG 107952 || |||| || |||||||| |||||||||||||| ||||| |||||||||||||| |||| Sbjct 2815169 AGCTGGTTCCCGTGGTTTACGCCTCCTGGTCCAGGGTGCAGGCTGACCTGAACTGCATGG 2815228 Query 107953 AAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACT 108012 | |||||||||| |||| |||||| |||| ||||| |||||||| || |||||||||| Sbjct 2815229 AGGACTTGCTCCGGAGCCCAGTGCGGTGGACCTACTTGCTGAATACCTGTGGGACAGACT 2815288 Query 108013 TCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACA 108072 | |||||||||||||| || |||||||||| |||||| | ||||||||| || ||||||| Sbjct 2815289 TTCCCATAAAGACCAACGCTGAGATGGTCCGGGCCCTGAGGATGTTGAACGGGAAGAACA 2815348 Query 108073 GTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGG 108132 | |||||||| || | || |||| |||||||| || |||||||| | ||| | || Sbjct 2815349 GCATGGAGTCAGAAATCCCCAGCGAGTACAAAAAAACCCGATGGAAATATCACTACGTGG 2815408 Query 108133 TGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCA 108192 ||| |||| ||||| |||||||||| |||||| ||||||||| | || || ||| Sbjct 2815409 TGAAGGACAAGTTGTACATAACCAGCAAGAAGAAGGAGCCTCCCCCTTACAACGTAACCA 2815468 Query 108193 TGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACA 108252 ||||||| || |||||||| ||||||| ||||| | ||| ||||| || ||| || | | Sbjct 2815469 TGTTCACCGGCAATGCCTACATTGTGGCTTCTCGGGACTTCGTCCATCACGTCCTAAATA 2815528 Query 108253 ACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACC 108312 ||||||||||||| ||| | |||||||| ||||||||||| || || |||||||| | Sbjct 2815529 ACCCTAAATCCCAGCAGCTGATCGAATGGGTGAAAGACACCTACAGTCCTGACGAACATC 2815588 Query 108313 TCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGT 108372 ||||||||||||| ||||| || || |||||||| |||||| || || |||||| Sbjct 2815589 TCTGGGCCACCCTCCAGCGGGCCCCCTGGATGCCCGGCTCTTCGCCCTTGCATGCCAAGT 2815648 Query 108373 ATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAG 108432 || ||||||| |||||||| ||||| |||||||| |||||||||||| | || ||||| | Sbjct 2815649 ATGACATCTCGGACATGACCGCCATTGCCAGGCTGGTCAAGTGGCAGCAACATGAGGGTG 2815708 Query 108433 ATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCA 108492 | ||||| |||||| ||||||| ||| |||||||| |||| ||| |||||||||||| Sbjct 2815709 ACATCAGCCAGGGGGCACCTTATGGACCTTGCTCTGGGGTCCACCGGCGGGCCATCTGCA 2815768 Query 108493 TTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGT 108552 |||| ||||||||||||||| ||||||| || ||||| || || || ||||| ||||||| Sbjct 2815769 TTTATGGGGCCGGGGACCTGCACTGGATGCTGCAGAATCACCATCTGTTGGCCAACAAGT 2815828 Query 108553 TTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGG 108612 ||||||| | |||||||||||| || || |||||| | ||||||||||| ||||| |||| Sbjct 2815829 TTGACCCAAAGGTGGATGATAATGTTCTTCAGTGCCTGGAAGAGTACCTGCGTCACAAGG 2815888 Query 108613 CCATCTATGGGACTGAACTTTGAG 108636 |||| |||||| || || |||| Sbjct 2815889 CCATTTATGGGGTTGGGCTGTGAG 2815912 >seq3122 Length=33939536 Score = 141 bits (156), Expect = 6e-29 Identities = 577/895 (64%), Gaps = 47/895 (5%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || ||||| ||| || |||||| ||||| ||||| || ||||||||| | || Sbjct 27422742 CCCCTTAGCAAAGAGGAGGCAGGCTTCCCGATTGCGTACTCCATAGTGGTCCATCACAAA 27422801 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 || || | |||| |||| || | ||| | ||| |||||||| | || || || Sbjct 27422802 ATCGAGATGCTTGACAGGCTTCTAAGGGCCATTTATATGCCTCAGAATTTCTATTGCATC 27422861 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || ||||| || || || | |||| || ||||| || | ||| ||||| Sbjct 27422862 CATGTGGACAGAAAATCAAAGGACTCCTTCATAGCCGCGGTGAAAGGCATCGCGTCCTGT 27422921 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| |||||||| |||||||| || ||| ||||| || || || ||| | | Sbjct 27422922 TTCAGGAATGTCTTTGTGGCCAGTCAGCTGGAGAGCGTGGTCTACGCATCGTGGAGCCGG 27422981 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGC--CATGGAAGT 107985 ||||| |||||||||||||| ||| | ||| | || |||| | || || ||||||| Sbjct 27422982 GTGCAGGCTGACCTGAACTGCATGAAGGACCT-CTACAGA-ATGAGCGCGGACTGGAAGT 27423039 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 || | | || || |||| || || ||||| || ||||| || || ||| | Sbjct 27423040 ACCTGATCAACCTTTGTGGGATGGATTTTCCCATTAAAACCAACCTGGAAATTGTCAGGA 27423099 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTG---AGGTACCTTCTGAGTCCa 108102 |||||| ||| | |||| | |||||| ||||| | | || | || || | || Sbjct 27423100 AGCTCAAGTCGTTCATGGGTGAAAACAGTCTGGAGACGGAGAAGATGCCATCCCA---CA 27423156 Query 108103 aaaaaaaTCGCTGGAAATACCGCTATG---------------AGGTGACAGACACACTGT 108147 || | | | ||||| | ||||| || |||||||||| | Sbjct 27423157 AAGCAGAAAGGTGGAAGAGGCACTATGCAGTTGTCGACGGGAAGCTGACAGACAC-GGGG 27423215 Query 108148 ACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATG 108207 |||| ||| || | | | ||| || || | || ||| | ||| |||||| | Sbjct 27423216 ACCC--CCA--AA----ACGCAGCCT-CCGCTCAAAA--CACCTCTTTTCTCAGGGAGCG 27423264 Query 108208 CCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAA-CCCTAAATCCCAA 108266 |||| ||||||| | | | | ||| |||| | || || | |||| | Sbjct 27423265 CCTACTTTGTGGTCAGCAGGGAGTATGTGGGCTATGTGCTGGAAAATGAAGACATCCGGA 27423324 Query 108267 AGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTT 108326 || | | || |||| ||||||| || ||||| || || | ||||||||||| | Sbjct 27423325 AG-TTCATGGAGTGGGCACAAGACACGTACAGCCCTGATGAGTATCTCTGGGCCACGATC 27423383 Query 108327 CAGCGTGCTCCGTG-GATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGA 108385 || | | ||| || | || ||||| | || ||| |||||| || | || || Sbjct 27423384 CAAAG-GATCCCTGAGGCCCCAGGCTCCCTGCCCCTGAACCACAAGTACGACCTATCTGA 27423442 Query 108386 CATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGG 108445 |||| ||| | |||||| |||||||||||||||||| || || || | | || ||| Sbjct 27423443 CATGCAGGCCGTGGCCAGGTTCGTCAAGTGGCAGTACCTTGAAGGGGACCTGAACAAGGG 27423502 Query 108446 GGCGCCTTATGCACCCTGCTCTGGAATCCAT---CGGAGGGCCATCTGCATTTACGGGGC 108502 ||||| ||| | || || ||| ||||| || || | | ||||||| || || Sbjct 27423503 CGCGCCCTATCCCCCGTGTGATGGGGTCCATGTACGCAG---CGTGTGCATTTTTGGAGC 27423559 Query 108503 CGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 |||||| || ||||| || | || || ||| | || || |||||||||||| Sbjct 27423560 TGGGGACTTGACGTGGATGCTGCGCAAACACCACTTTTTTGCCAACAAGTTTGAC 27423614 >seq3105 Length=21505965 Score = 89.7 bits (98), Expect = 4e-13 Identities = 198/295 (67%), Gaps = 18/295 (6%) Strand=Plus/Plus Query 107787 CCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCG 107846 ||||| || || |||||||| |||||||||| |||| | | | |||||||| ||| Sbjct 6660360 CCTCAAAATATCTACTGTGTGCACGTGGATGAGAAGGCGACTGCTGAATTCAAAGATGCG 6660419 Query 107847 GTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTG 107906 || || | | |||||||||||| | |||| ||||| | | ||| |||||| Sbjct 6660420 GTGGAGCAGTTGCTGAGCTGCTTCCCCAACGCCTTCCTGGCCTCCAGGATGGAGCCGGTG 6660479 Query 107907 GTTTATGCCTCCTGG----TCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTG-- 107960 || || | ||| ||||| | || || |||||| ||||| | ||| || Sbjct 6660480 GTCTACG----GTGGGATTTCCAGGCTCCAGGCCGACCTGCACTGTCTAAGGGACCTGGT 6660535 Query 107961 ---CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCC 108017 ||||| || ||||| ||||||||| | || || || |||||| || ||||| Sbjct 6660536 GGCCTCCA-AG----GTGCCCTGGAAGTACGTCCTCAACACCTGCGGGCAGGATTTCCCA 6660590 Query 108018 ATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACA 108072 | |||||||| ||||| |||| | ||| ||| || || || ||||||| Sbjct 6660591 CTGAAGACCAACAAGGAGATCGTCCAGTACCTGAAGGGATTCAAAGGGAAGAACA 6660645 Score = 87.8 bits (96), Expect = 1e-12 Identities = 247/374 (66%), Gaps = 24/374 (6%) Strand=Plus/Plus Query 107711 CTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCT 107770 ||||||| | |||||| |||||| | || || | | || | ||| || ||||| | Sbjct 6687675 CTTCCCCCTGGCCTACGTCATGGTGCTGCACAAGGACTTCGACACCTTCGAGCGGCTCTT 6687734 Query 107771 GCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCC---CC 107827 || ||||| || || || || | ||||| || |||||||| | ||| || || Sbjct 6687735 CCGCGCCGTCTACATGCCGCACAATGTCTACTGCGTGCACGTGGACGCCAAGGCCGACCC 6687794 Query 107828 AGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGC 107887 ||| || || || | | || || | | | |||||||||||| | |||| |||| Sbjct 6687795 CGAG--TTCCACAGCG-CAGTGCAGCTCTTGCTGAGCTGCTTCCCCAACGCCTTCCTGGC 6687851 Query 107888 CAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGG----TCCAGAGTGCAAGCTGACCTGA 107943 | | | |||| |||||||| || | ||| ||||| | || |||||||||| Sbjct 6687852 CTCCAGGATGGTGCCGGTGGTCTACG----GTGGGATTTCCAGGCTCCAGGCTGACCTGA 6687907 Query 107944 ACTGTATGGAAGACTTG-----CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATAC 107998 |||| || ||| || |||| ||| ||||| ||||||||| | | || || Sbjct 6687908 ACTGCCTGAGGGACCTGGTGGCCTCC-GAG----GTGCCCTGGAAGTACGTCATCAACAC 6687962 Query 107999 ATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTT 108058 |||||| || ||||| | |||||||| ||||| |||| | ||| ||| || Sbjct 6687963 CTGCGGGCAGGATTTCCCACTGAAGACCAACAAGGAGATCGTCCAGCACCTGAAGGGATT 6688022 Query 108059 GAAGGGTAAGAACA 108072 || || ||||||| Sbjct 6688023 CAAAGGGAAGAACA 6688036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348255455210256