Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq3106 212 6e-50 seq3018 89.7 5e-13 >seq3106 Length=22756556 Score = 212 bits (234), Expect = 6e-50 Identities = 614/938 (65%), Gaps = 13/938 (1%) Strand=Plus/Minus Query 13855 CTAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13914 |||||| ||| |||| || | ||| ||| || | | || ||||| ||||| | Sbjct 217615 CTAAAAGTCAGCATCCAATGTGAAAGAATTCTCCGTGGGGCTGGACATAACTCCCATCCT 217556 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | || || || ||||||||||| || || ||||| || || ||||| || Sbjct 217555 CTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGAGAAATATTCTC 217496 Query 13975 CATAAAATCAAATGGATTTGTTGACAT-AAACACTTTATCACAACCTAGTTCTAATAGTA 14033 ||| || |||||||||||| | || | ||| || || || | || || |||| | | Sbjct 217495 CATGAAGTCAAATGGATTT-TCCACTTGAAAAACCTTGCCAAAGCCCAGCTCTAGCATGA 217437 Query 14034 ATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 14093 || || || | |||||| || || || ||| | || || ||||| || || || | Sbjct 217436 GCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAGTTCATGCCAATCAGCT 217377 Query 14094 TTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 14153 | || || | | || | || || | || || || || | | ||||| Sbjct 217376 TCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACGGCGTTGACGATAATCT 217317 Query 14154 TCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 14213 | | | | | | || || || | || || || || || | || || || | Sbjct 217316 CCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTTGAACATCAGGCAGGCGAAGT 217257 Query 14214 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 14273 |||| || |||||||||||||| || || ||||| || ||||| || | || ||||| | Sbjct 217256 CACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGA 217197 Query 14274 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 14333 ||| ||||| || | ||| || || | || || || || ||||| || || || || | Sbjct 217196 GTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTCCA 217137 Query 14334 CTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTC 14393 | |||||||| |||| | ||||| ||| | | || | ||||| | ||||| Sbjct 217136 CGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTTTGTCCCCAATCCAGCGCA 217077 Query 14394 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA--AATG 14451 ||||| || || || || | | | ||| || || || ||||| || | || Sbjct 217076 AGGCCCAGTCCGA---CTTCTTCACACAGGGCATGGTCTCGATGGCATTGAAGAGGAACT 217020 Query 14452 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14511 | |||||| | | ||| || || ||||| || || | || ||||||||||| || Sbjct 217019 CCCTTTCTCTGGAATCTTTG--ATATAAGTATCGATGAGGAGACTGTACATTTCAGAATG 216962 Query 14512 TATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14571 ||||||||||| || ||||| || || || ||||| | ||| |||| ||| || || Sbjct 216961 AATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTC 216902 Query 14572 TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC 14631 | | || | || ||||||| ||||| ||||| ||||| || || ||||| || || Sbjct 216901 TTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGCTGGCGGCAAAGAAAGC 216842 Query 14632 CAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAA-- 14689 || | || | ||||||||| ||| || | || || ||| | ||| || Sbjct 216841 CAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTTCCCAGT--GCTGAATG 216784 Query 14690 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATT 14749 || || |||||||| || || || | |||||||| || | ||||| |||||||| Sbjct 216783 TCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCTTTCTTATACATC 216724 Query 14750 ACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14787 ||| || || | ||| ||||| || | ||||| Sbjct 216723 TGCCAAATGTCATGGTATTCGATAGGGAAGATGACAAA 216686 >seq3018 Length=3443724 Score = 89.7 bits (98), Expect = 5e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 13855 CTAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13914 |||||| ||| |||| || | |||| ||| || | | || ||||| ||||| | Sbjct 3375797 CTAAAAGTCAGCATCCAATGTAAAAGAATTCTCCGTGGGGCTGGACATAACTCCCATCCT 3375856 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | || || || ||||||||||| || || |||||||| || ||||| || Sbjct 3375857 CTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCCAGAGAAATATTCTC 3375916 Query 13975 CATAAAATCAAATGGATTT 13993 ||| || |||||||||||| Sbjct 3375917 CATGAAGTCAAATGGATTT 3375935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482326643817920