Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 212 6e-50
seq3018 89.7 5e-13
>seq3106
Length=22756556
Score = 212 bits (234), Expect = 6e-50
Identities = 614/938 (65%), Gaps = 13/938 (1%)
Strand=Plus/Minus
Query 13855 CTAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13914
|||||| ||| |||| || | ||| ||| || | | || ||||| ||||| |
Sbjct 217615 CTAAAAGTCAGCATCCAATGTGAAAGAATTCTCCGTGGGGCTGGACATAACTCCCATCCT 217556
Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974
||||| || | || || || ||||||||||| || || ||||| || || ||||| ||
Sbjct 217555 CTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGAGAAATATTCTC 217496
Query 13975 CATAAAATCAAATGGATTTGTTGACAT-AAACACTTTATCACAACCTAGTTCTAATAGTA 14033
||| || |||||||||||| | || | ||| || || || | || || |||| | |
Sbjct 217495 CATGAAGTCAAATGGATTT-TCCACTTGAAAAACCTTGCCAAAGCCCAGCTCTAGCATGA 217437
Query 14034 ATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 14093
|| || || | |||||| || || || ||| | || || ||||| || || || |
Sbjct 217436 GCCTGTCAGCCACGAACTCGATGTACTGCTTCATGAGCTCGCAGTTCATGCCAATCAGCT 217377
Query 14094 TTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 14153
| || || | | || | || || | || || || || | | |||||
Sbjct 217376 TCACTGGCAAGGCCTCCGTGAGGAACTCCTGCTCGATTCTGACGGCGTTGACGATAATCT 217317
Query 14154 TCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 14213
| | | | | | || || || | || || || || || | || || || |
Sbjct 217316 CCTTCACCCTCTGCTCTGAGGGTCTATGCATCAGGTGCTTGAACATCAGGCAGGCGAAGT 217257
Query 14214 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 14273
|||| || |||||||||||||| || || ||||| || ||||| || | || ||||| |
Sbjct 217256 CACAGTGCAGGCCCTCATCTCTGCTGATGAGTTCATTGGAAAAGGTGAGGCCGGGCATGA 217197
Query 14274 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 14333
||| ||||| || | ||| || || | || || || || ||||| || || || || |
Sbjct 217196 GTCCCCGTTTCTTCAGCCAGAAGATCGACGCAAAAGAACCAGAAAAAAAGATGCCTTCCA 217137
Query 14334 CTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTC 14393
| |||||||| |||| | ||||| ||| | | || | ||||| | |||||
Sbjct 217136 CGGCAGCAAAGGCTACCACGCGTTCCCCATAAGTGGCCTCTTTGTCCCCAATCCAGCGCA 217077
Query 14394 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA--AATG 14451
||||| || || || || | | | ||| || || || ||||| || | ||
Sbjct 217076 AGGCCCAGTCCGA---CTTCTTCACACAGGGCATGGTCTCGATGGCATTGAAGAGGAACT 217020
Query 14452 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14511
| |||||| | | ||| || || ||||| || || | || ||||||||||| ||
Sbjct 217019 CCCTTTCTCTGGAATCTTTG--ATATAAGTATCGATGAGGAGACTGTACATTTCAGAATG 216962
Query 14512 TATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14571
||||||||||| || ||||| || || || ||||| | ||| |||| ||| || ||
Sbjct 216961 AATGTTTTCCATGGCGATCTGGAAGCCGTAGAAACAGCGAGCCTCTGTGATTTGAACTTC 216902
Query 14572 TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC 14631
| | || | || ||||||| ||||| ||||| ||||| || || ||||| || ||
Sbjct 216901 TTGGCTGAACCGCTCCACCAAATTCTCATTGACTATGCCATCGCTGGCGGCAAAGAAAGC 216842
Query 14632 CAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAA-- 14689
|| | || | ||||||||| ||| || | || || ||| | ||| ||
Sbjct 216841 CAGAACGTGTGATATAAAGTATCTCTCCTCGGGCTTCAGGGCTTCCCAGT--GCTGAATG 216784
Query 14690 TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATT 14749
|| || |||||||| || || || | |||||||| || | ||||| ||||||||
Sbjct 216783 TCTTTGGAAAGATCCACCTCCTCTGCCGTCCAAAAGGAGGCCTCGGCTTTCTTATACATC 216724
Query 14750 ACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14787
||| || || | ||| ||||| || | |||||
Sbjct 216723 TGCCAAATGTCATGGTATTCGATAGGGAAGATGACAAA 216686
>seq3018
Length=3443724
Score = 89.7 bits (98), Expect = 5e-13
Identities = 103/139 (74%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 13855 CTAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTT 13914
|||||| ||| |||| || | |||| ||| || | | || ||||| ||||| |
Sbjct 3375797 CTAAAAGTCAGCATCCAATGTAAAAGAATTCTCCGTGGGGCTGGACATAACTCCCATCCT 3375856
Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974
||||| || | || || || ||||||||||| || || |||||||| || ||||| ||
Sbjct 3375857 CTGATACTCGCCTACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCCAGAGAAATATTCTC 3375916
Query 13975 CATAAAATCAAATGGATTT 13993
||| || ||||||||||||
Sbjct 3375917 CATGAAGTCAAATGGATTT 3375935
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482326643817920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |