Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq3082 95.1 9e-15
seq3105 86.0 5e-12
>seq3082
Length=10725151
Score = 95.1 bits (104), Expect = 9e-15
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || || ||||| || ||||||||||| | | || || ||||
Sbjct 1251220 AGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCT 1251161
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| || ||||| ||| |||| || || || || || || | ||||||||||||
Sbjct 1251160 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTTATCC 1251101
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | ||| || | ||| ||||| | |||||| || | ||||||| |
Sbjct 1251100 TGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTC 1251041
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
||||| |||| ||||| || || |||||||||||
Sbjct 1251040 TTGCCAGTCAGGGTTTTCACGAAGATTTGCATTTT 1251006
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173
|| |||| ||| || || || ||||| || ||||||||||| | | || || ||||
Sbjct 1251676 AGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCATCT 1251617
Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233
|||| || ||||| ||| |||| || || || || || || | |||||| |||||
Sbjct 1251616 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 1251557
Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293
|| | ||| || | ||| ||||||| |||||| ||| | ||||||| |
Sbjct 1251556 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTC 1251497
Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
||||| |||| ||| || || || || |||||
Sbjct 1251496 TTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 1251465
>seq3105
Length=21505965
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 18102 CCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATT 18161
|| || ||||| | || | ||||| || || || |||||||||||||| || | ||
Sbjct 7417339 CCACGGAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAATCAGACAAA 7417398
Query 18162 GTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACG 18221
|| | |||||||| |||| | | ||| |||| || ||||| ||||| || |
Sbjct 7417399 GTACGTCCATCTTCCAGTTGTGTAGCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATT 7417458
Query 18222 CCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCA 18281
||||||||||| || | ||| || | | | | |||||| ||| || || ||
Sbjct 7417459 CCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCAGGGGTTCAGTCTCG 7417518
Query 18282 ATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
| ||||| | || || || || |||||||||||||| |||| ||
Sbjct 7417519 TGGATGATGGTCTTCCCTGTAAAGGTTTTTACAAAAATCGGCATCTT 7417565
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379329464486280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |