Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03] 3,144 sequences; 2,723,219,641 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3106 228 7e-55 seq3040 120 3e-22 seq2965 98.7 9e-16 seq3135 93.3 4e-14 seq3061 91.5 1e-13 seq2997 91.5 1e-13 seq3082 89.7 5e-13 seq3063 87.8 2e-12 >seq3106 Length=22756556 Score = 228 bits (252), Expect = 7e-55 Identities = 606/916 (66%), Gaps = 25/916 (3%) Strand=Plus/Plus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 || |||||||| || |||||| ||||| | |||||||| || || || ||||| | Sbjct 216653 GAGGAACCACTGCTGAGAGAGAACCCCCGGCGCTTTGTCATCTTCCCTATCGAATACCAT 216712 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 ||||||||| | ||||| || || || || || || |||||||| | || || || || Sbjct 216713 GACATTTGGCAGATGTATAAGAAAGCCGAGGCCTCCTTTTGGACGGCAGAGGAGGTGGAT 216772 Query 57627 CTGTCTAAGGATCTG-AGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAA 57685 || || || || | ||| | ||||| |||| || |||||| | ||||| Sbjct 216773 CTTTCCAAAGACATTCAGC-ACTGGGAAGCCCTGAAGCCCGAGGAGAGATACTTTATATC 216831 Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAG 57745 |||||| |||| || || ||||| |||||| || || || ||||||||||| || | Sbjct 216832 ACACGTTCTGGCTTTCTTTGCCGCCAGCGATGGCATAGTCAATGAGAATTTGGTGGAGCG 216891 Query 57746 ATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCAT 57805 || |||||||| ||| | || ||||| | || || ||||| || || | ||||| Sbjct 216892 GTTCAGCCAAGAAGTTCAAATCACAGAGGCTCGCTGTTTCTACGGCTTCCAGATCGCCAT 216951 Query 57806 TGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGA 57865 |||||| | ||||| |||||||| || ||||||||||| || | || || | Sbjct 216952 GGAAAACATTCATTCTGAAATGTACAGTCTCCTCATCGATACTTATATCAAAGATTCC-- 217009 Query 57866 CGAGAAACGTAG--ACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCA 57923 |||||| | || || ||||| || ||||| || |||||| | |||||| | Sbjct 217010 AGAGAAAGGGAGTTCCTCTTCAATGCCATCGAGACCATGCCC---TGTGTGAAGAAGTCG 217066 Query 57924 GAGTGGTCAATCAAATGGAT-----AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAA 57978 || ||| | | ||||| | |||| |||||| | | || | | Sbjct 217067 GACTGGGCCTTGCGCTGGATTGGGGACAAAG-----AGGCCACTTATGGGGAACGCGTGG 217121 Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038 | || || || ||||| ||||| || || ||||| || |||||| | || || ||| Sbjct 217122 TAGCCTTTGCTGCCGTGGAAGGCATCTTTTTTTCTGGTTCTTTTGCGTCGATCTTCTGGC 217181 Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098 |||||||||| || || ||||||||||| || ||| ||| || | || | || | Sbjct 217182 TGAAGAAACGGGGACTCATGCCCGGCCTCACCTTTTCCAATGAACTCATCAGCAGAGATG 217241 Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGC 58158 |||| || || ||| || || ||||| |||| | ||| | | ||| ||| | Sbjct 217242 AGGGCCTGCACTGTGACTTCGCCTGCCTGATGTTCAAGCACCTGATGCATAGACCCTCAG 217301 Query 58159 GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCG 58218 | | | | ||| |||||| | | || ||| ||||| | ||||| |||| | Sbjct 217302 AGCAGAGGGTGAAGGAGATTATCGTCAACGCCGTCAGAATCGAGCAGGAGTTCCTCACGG 217361 Query 58219 AAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGT 58278 | ||| | || ||| || | || |||||| || | ||| ||||||| |||| Sbjct 217362 AGGCCTTGCCAGTGAAGCTGATTGGCATGAACTGCGAGCTCATGAAGCAGTACATCGAGT 217421 Query 58279 TTGTTGCCGACAGACTTTTGCTCGAACTG---ATTGGAGAGCGTCATTACAACACGAAAA 58335 | || || ||||| || |||| || ||| |||| || || || ||| | ||| Sbjct 217422 TCGTGGCTGACAGGCTCATGCTAGAGCTGGGCTTTGGCAAG-GT-TTTTCAA-GTGGAAA 217478 Query 58336 ATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaa 58395 |||| ||||| || ||| | || || || || || ||||||||||| || || || | Sbjct 217479 ATCCATTTGACTTCATGGAGAATATTTCTCTAGAAGGGAAGACAAACTTCTTTGAGAAGA 217538 Query 58396 aaGTTAGCGAATATCA 58411 || |||| ||||| Sbjct 217539 GGGTAGGCGAGTATCA 217554 >seq3040 Length=4637412 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || || ||||| ||||| || || || ||||| || || || || Sbjct 3943327 ACCTCATCTTTGCTGGTATATTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTT 3943268 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| |||||||| || ||||| ||||||||||||||||| || Sbjct 3943267 CCCAGGTTCTGCTGGTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTA 3943208 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||||||| ||| |||||||| || || Sbjct 3943207 CCCGTCTCTGTCTGAGACTCGATAATGGC 3943179 >seq2965 Length=1497097 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| || || ||||| || |||||| |||| || || || Sbjct 1203885 CATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTAGAGCCCAG 1203944 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| | || |||||||| ||| | || || ||||| Sbjct 1203945 TGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCA 1204004 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||||||||| ||| |||||||| || | ||| || || Sbjct 1204005 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAA 1204064 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||| || || || || || || || ||||| || | |||||||| ||| Sbjct 1204065 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGAGGGGAGGT 1204113 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||||||||| || || ||||| || |||||| |||| || || || Sbjct 1203658 ATGCAGATCTTCGTAAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTAGAGCCCAGT 1203717 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || |||||||| ||| | || || |||||| Sbjct 1203718 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 1203777 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||||||||| ||| |||||||| || | || || ||| Sbjct 1203778 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCTGACTACAAC 1203837 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || || || || || ||||| || | ||||| || || Sbjct 1203838 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGAGAGGTGG 1203884 >seq3135 Length=60673567 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || | ||||| || |||||| | || ||||| || | Sbjct 60530223 ATGCAGATATTCGTGAAGACCCTAAGGGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 60530282 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| || | |||||| | ||| |||||||||||| | || ||||||||| Sbjct 60530283 GACACCAGTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAAGGCATCCCACCCGACCAG 60530342 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 | || || |||| || ||||||||| |||| ||| | |||| | || || ||| Sbjct 60530343 CGGCTCCTGGTATTTGCCGGCAAACAGCTGGAGGACGGTCGGACTCTCTCGGACTACAAC 60530402 Query 31373 ATTCAAAAAGAATC 31386 ||||| ||||| || Sbjct 60530403 ATTCAGAAAGAGTC 60530416 >seq3061 Length=7642621 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/217 (71%), Gaps = 7/217 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||| |||| || || ||||| || || |||||| || | | |||||| || Sbjct 2174423 ATGCAGATTTTCATAAA-ACCCTTACAGGAAAGACCATCACCCTCAAGGCTGAACCTTCA 2174481 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| ||| |||| || || | || ||| |||||||| | || || || || Sbjct 2174482 GACACTGTAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAA 2174541 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || | || || || ||||| || ||||||| | ||| ||| || ||||| || Sbjct 2174542 CAAAGGCTGATCTTTGCTGGTAAC----TGGAAGA-TGGATGCACTTTGTCTGATTACAA 2174596 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGA 31408 ||||||||| || | ||||||||||| || || ||| Sbjct 2174597 CATTCAAAAGGAGACCACTCTTCATCTTGTGCTGAGA 2174633 >seq2997 Length=2481227 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || || || |||||| |||| || | | || || || | |||| |||| |||||||| Sbjct 411483 AAGATACAGATTTTCATAAAAACCGTTATGGGGAAGACCACCACC-TCGAGGTTGAACCC 411541 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| ||| |||| || || | || ||| |||||||| | || || || Sbjct 411542 TCGGACACTGTAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 411601 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || ||||| || || ||||||| | ||| ||| || | ||| Sbjct 411602 CAGCAAGGGCTGATCTTTGCTGGTAAGCAACTGGAAGATTGGATGTACTTTGTCTGGTTA 411661 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||||||||| || | ||||||||||| || | ||||| Sbjct 411662 CAACATTCAAAAGGAGTTCACTCTTCATCTTGTGTTGAGACT 411703 >seq3082 Length=10725151 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||||||||| ||||| || ||||| | || || || || | Sbjct 1251237 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAGC 1251296 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||| || |||||| | || || |||||| Sbjct 1251297 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAG 1251356 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||| ||| ||||||| | ||| | || || ||| Sbjct 1251357 CAGAGGCTTATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAAC 1251416 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || ||||| || ||||| || ||||| || | ||||| || || Sbjct 1251417 ATCCAGAAAGAGTCCACTCTGCACCTGGTGCTGCGCCTGAGAGGTGG 1251463 >seq3063 Length=7952490 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| ||||||||||| || || || || | || |||||| || | ||||| || Sbjct 5877500 AAGATGCAGATTTTCGTAAAAACCCTTACGGGGAGGACCATCACCCTCCAGGTTGAGCCC 5877559 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||| ||| | | |||| || || | || || |||||||| | || || || Sbjct 5877560 TCCAACACTATAGAAAATGTAAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCTGAT 5877619 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||| | || || || | ||| || || ||||||| | ||| ||| || ||||| Sbjct 5877620 CAGCAAAGGCTGATCTTTGTTGGTAAGCAACTGGAAGA-TGGATGCACTTTGTCTGATTA 5877678 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||||| || || ||||| ||||| || | ||||| Sbjct 5877679 CAACATTCAAAGGGAGTCCACTCTCCATCTTGTGTTGAGACT 5877720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445748881380480