Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cavia_20porcellus_20[refseq_20GCF_5F000151735.1_202008-03-03]
3,144 sequences; 2,723,219,641 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq3106 228 7e-55
seq3040 120 3e-22
seq2965 98.7 9e-16
seq3135 93.3 4e-14
seq3061 91.5 1e-13
seq2997 91.5 1e-13
seq3082 89.7 5e-13
seq3063 87.8 2e-12
>seq3106
Length=22756556
Score = 228 bits (252), Expect = 7e-55
Identities = 606/916 (66%), Gaps = 25/916 (3%)
Strand=Plus/Plus
Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566
|| |||||||| || |||||| ||||| | |||||||| || || || ||||| |
Sbjct 216653 GAGGAACCACTGCTGAGAGAGAACCCCCGGCGCTTTGTCATCTTCCCTATCGAATACCAT 216712
Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626
||||||||| | ||||| || || || || || || |||||||| | || || || ||
Sbjct 216713 GACATTTGGCAGATGTATAAGAAAGCCGAGGCCTCCTTTTGGACGGCAGAGGAGGTGGAT 216772
Query 57627 CTGTCTAAGGATCTG-AGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAA 57685
|| || || || | ||| | ||||| |||| || |||||| | |||||
Sbjct 216773 CTTTCCAAAGACATTCAGC-ACTGGGAAGCCCTGAAGCCCGAGGAGAGATACTTTATATC 216831
Query 57686 ACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAG 57745
|||||| |||| || || ||||| |||||| || || || ||||||||||| || |
Sbjct 216832 ACACGTTCTGGCTTTCTTTGCCGCCAGCGATGGCATAGTCAATGAGAATTTGGTGGAGCG 216891
Query 57746 ATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCAT 57805
|| |||||||| ||| | || ||||| | || || ||||| || || | |||||
Sbjct 216892 GTTCAGCCAAGAAGTTCAAATCACAGAGGCTCGCTGTTTCTACGGCTTCCAGATCGCCAT 216951
Query 57806 TGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGA 57865
|||||| | ||||| |||||||| || ||||||||||| || | || || |
Sbjct 216952 GGAAAACATTCATTCTGAAATGTACAGTCTCCTCATCGATACTTATATCAAAGATTCC-- 217009
Query 57866 CGAGAAACGTAG--ACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCA 57923
|||||| | || || ||||| || ||||| || |||||| | |||||| |
Sbjct 217010 AGAGAAAGGGAGTTCCTCTTCAATGCCATCGAGACCATGCCC---TGTGTGAAGAAGTCG 217066
Query 57924 GAGTGGTCAATCAAATGGAT-----AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAA 57978
|| ||| | | ||||| | |||| |||||| | | || | |
Sbjct 217067 GACTGGGCCTTGCGCTGGATTGGGGACAAAG-----AGGCCACTTATGGGGAACGCGTGG 217121
Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038
| || || || ||||| ||||| || || ||||| || |||||| | || || |||
Sbjct 217122 TAGCCTTTGCTGCCGTGGAAGGCATCTTTTTTTCTGGTTCTTTTGCGTCGATCTTCTGGC 217181
Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098
|||||||||| || || ||||||||||| || ||| ||| || | || | || |
Sbjct 217182 TGAAGAAACGGGGACTCATGCCCGGCCTCACCTTTTCCAATGAACTCATCAGCAGAGATG 217241
Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGC 58158
|||| || || ||| || || ||||| |||| | ||| | | ||| ||| |
Sbjct 217242 AGGGCCTGCACTGTGACTTCGCCTGCCTGATGTTCAAGCACCTGATGCATAGACCCTCAG 217301
Query 58159 GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCG 58218
| | | | ||| |||||| | | || ||| ||||| | ||||| |||| |
Sbjct 217302 AGCAGAGGGTGAAGGAGATTATCGTCAACGCCGTCAGAATCGAGCAGGAGTTCCTCACGG 217361
Query 58219 AAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGT 58278
| ||| | || ||| || | || |||||| || | ||| ||||||| ||||
Sbjct 217362 AGGCCTTGCCAGTGAAGCTGATTGGCATGAACTGCGAGCTCATGAAGCAGTACATCGAGT 217421
Query 58279 TTGTTGCCGACAGACTTTTGCTCGAACTG---ATTGGAGAGCGTCATTACAACACGAAAA 58335
| || || ||||| || |||| || ||| |||| || || || ||| | |||
Sbjct 217422 TCGTGGCTGACAGGCTCATGCTAGAGCTGGGCTTTGGCAAG-GT-TTTTCAA-GTGGAAA 217478
Query 58336 ATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaa 58395
|||| ||||| || ||| | || || || || || ||||||||||| || || || |
Sbjct 217479 ATCCATTTGACTTCATGGAGAATATTTCTCTAGAAGGGAAGACAAACTTCTTTGAGAAGA 217538
Query 58396 aaGTTAGCGAATATCA 58411
|| |||| |||||
Sbjct 217539 GGGTAGGCGAGTATCA 217554
>seq3040
Length=4637412
Score = 120 bits (132), Expect = 3e-22
Identities = 116/149 (78%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107
||||| |||||| || || ||||| ||||| || || || ||||| || || || ||
Sbjct 3943327 ACCTCATCTTTGCTGGTATATTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTT 3943268
Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167
|||| || ||||||||| |||||||| || ||||| ||||||||||||||||| ||
Sbjct 3943267 CCCAGGTTCTGCTGGTTGCTCTTTCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTA 3943208
Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196
|||||||| ||| |||||||| || ||
Sbjct 3943207 CCCGTCTCTGTCTGAGACTCGATAATGGC 3943179
>seq2965
Length=1497097
Score = 98.7 bits (108), Expect = 9e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| || || ||||| || |||||| |||| || || ||
Sbjct 1203885 CATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTAGAGCCCAG 1203944
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|||| | || | ||||| | || |||||||| ||| | || || |||||
Sbjct 1203945 TGACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCA 1204004
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | || || ||||||||||| ||| |||||||| || | ||| || ||
Sbjct 1204005 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCCGACTACAA 1204064
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420
||| || || || || || || || ||||| || | |||||||| |||
Sbjct 1204065 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGAGGGGAGGT 1204113
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||||||||| || || ||||| || |||||| |||| || || ||
Sbjct 1203658 ATGCAGATCTTCGTAAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTAGAGCCCAGT 1203717
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | ||||| | || |||||||| ||| | || || ||||||
Sbjct 1203718 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 1203777
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | || || ||||||||||| ||| |||||||| || | || || |||
Sbjct 1203778 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTCTCTGACTACAAC 1203837
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|| || || || || || || || ||||| || | ||||| || ||
Sbjct 1203838 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCCTGAGAGGTGG 1203884
>seq3135
Length=60673567
Score = 93.3 bits (102), Expect = 4e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| || | ||||| || |||||| | || ||||| || |
Sbjct 60530223 ATGCAGATATTCGTGAAGACCCTAAGGGGCAAGACCATCACCCTTGAGGTTGAGCCCAGC 60530282
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| || | |||||| | ||| |||||||||||| | || |||||||||
Sbjct 60530283 GACACCAGTGAGAATGTCAAAGCCAAAATCCAAGACAAGGAAGGCATCCCACCCGACCAG 60530342
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
| || || |||| || ||||||||| |||| ||| | |||| | || || |||
Sbjct 60530343 CGGCTCCTGGTATTTGCCGGCAAACAGCTGGAGGACGGTCGGACTCTCTCGGACTACAAC 60530402
Query 31373 ATTCAAAAAGAATC 31386
||||| ||||| ||
Sbjct 60530403 ATTCAGAAAGAGTC 60530416
>seq3061
Length=7642621
Score = 91.5 bits (100), Expect = 1e-13
Identities = 153/217 (71%), Gaps = 7/217 (3%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| |||||| |||| || || ||||| || || |||||| || | | |||||| ||
Sbjct 2174423 ATGCAGATTTTCATAAA-ACCCTTACAGGAAAGACCATCACCCTCAAGGCTGAACCTTCA 2174481
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| ||| |||| || || | || ||| |||||||| | || || || ||
Sbjct 2174482 GACACTGTAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAA 2174541
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371
|| | || || || ||||| || ||||||| | ||| ||| || ||||| ||
Sbjct 2174542 CAAAGGCTGATCTTTGCTGGTAAC----TGGAAGA-TGGATGCACTTTGTCTGATTACAA 2174596
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGA 31408
||||||||| || | ||||||||||| || || |||
Sbjct 2174597 CATTCAAAAGGAGACCACTCTTCATCTTGTGCTGAGA 2174633
>seq2997
Length=2481227
Score = 91.5 bits (100), Expect = 1e-13
Identities = 155/222 (70%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| || || |||||| |||| || | | || || || | |||| |||| ||||||||
Sbjct 411483 AAGATACAGATTTTCATAAAAACCGTTATGGGGAAGACCACCACC-TCGAGGTTGAACCC 411541
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
|| |||| ||| |||| || || | || ||| |||||||| | || || ||
Sbjct 411542 TCGGACACTGTAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 411601
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
||||| | || || || ||||| || || ||||||| | ||| ||| || | |||
Sbjct 411602 CAGCAAGGGCTGATCTTTGCTGGTAAGCAACTGGAAGATTGGATGTACTTTGTCTGGTTA 411661
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
||||||||||| || | ||||||||||| || | |||||
Sbjct 411662 CAACATTCAAAAGGAGTTCACTCTTCATCTTGTGTTGAGACT 411703
>seq3082
Length=10725151
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||||||||| ||||| || ||||| | || || || || |
Sbjct 1251237 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACTCTGGAGGTGGAGCCCAGC 1251296
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| | || | || || | || ||| || |||||| | || || ||||||
Sbjct 1251297 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAG 1251356
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
||| | || || || || ||||| ||| ||||||| | ||| | || || |||
Sbjct 1251357 CAGAGGCTTATCTTTGCAGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGACTACAAC 1251416
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|| || ||||| || ||||| || ||||| || | ||||| || ||
Sbjct 1251417 ATCCAGAAAGAGTCCACTCTGCACCTGGTGCTGCGCCTGAGAGGTGG 1251463
>seq3063
Length=7952490
Score = 87.8 bits (96), Expect = 2e-12
Identities = 154/222 (69%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| ||||||||||| || || || || | || |||||| || | ||||| ||
Sbjct 5877500 AAGATGCAGATTTTCGTAAAAACCCTTACGGGGAGGACCATCACCCTCCAGGTTGAGCCC 5877559
Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309
||| ||| | | |||| || || | || || |||||||| | || || ||
Sbjct 5877560 TCCAACACTATAGAAAATGTAAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCTGAT 5877619
Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368
||||| | || || || | ||| || || ||||||| | ||| ||| || |||||
Sbjct 5877620 CAGCAAAGGCTGATCTTTGTTGGTAAGCAACTGGAAGA-TGGATGCACTTTGTCTGATTA 5877678
Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
|||||||||| || || ||||| ||||| || | |||||
Sbjct 5877679 CAACATTCAAAGGGAGTCCACTCTCCATCTTGTGTTGAGACT 5877720
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445748881380480
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